Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K01
         (636 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)...   195   2e-50
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)...   195   2e-50
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)      190   7e-49
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con...    42   3e-04
At3g50610.1 68416.m05534 hypothetical protein                          31   0.48 
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR...    29   2.0  
At4g14620.1 68417.m02250 expressed protein contains Pfam profile...    29   2.6  
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain...    28   4.5  
At4g22580.1 68417.m03258 exostosin family protein contains Pfam ...    28   6.0  
At3g21340.1 68416.m02695 leucine-rich repeat protein kinase, put...    28   6.0  
At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF...    27   7.9  

>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
           similar to 60S acidic ribosomal protein P0 GI:2088654
           [Arabidopsis thaliana]
          Length = 323

 Score =  195 bits (476), Expect = 2e-50
 Identities = 95/174 (54%), Positives = 128/174 (73%), Gaps = 2/174 (1%)
 Frame = +3

Query: 75  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 255 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 428
           M+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 429 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIISDVHILKPGDKVGASEA 590
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII+ V ++K GDKVG+SEA
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEA 174


>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
           similar to putative 60S acidic ribosomal protein P0
           GB:P50346 [Glycine max]
          Length = 320

 Score =  195 bits (476), Expect = 2e-50
 Identities = 95/174 (54%), Positives = 128/174 (73%), Gaps = 2/174 (1%)
 Frame = +3

Query: 75  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTM 254
           M +  KA  K  Y  K+ QL+DEY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTM
Sbjct: 1   MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTM 60

Query: 255 MRKAIKDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAP 428
           M+++++ H E   N A+  LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP
Sbjct: 61  MKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAP 120

Query: 429 LSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIISDVHILKPGDKVGASEA 590
           + VV+   NTGL P +TSFFQ L+IPTKI+KGT+EII+ V ++K GDKVG+SEA
Sbjct: 121 IDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEA 174


>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 
          Length = 317

 Score =  190 bits (463), Expect = 7e-49
 Identities = 93/169 (55%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
 Frame = +3

Query: 90  KATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAI 269
           KA  K  Y  K+ QLL+EY +  +V ADNVGS Q+Q IR  LRG S+VLMGKNTMM++++
Sbjct: 7   KAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSV 66

Query: 270 KDHLET--NPALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVI 443
           + H +   N A   LLP ++GNVG +FT+GDL +V +++ + KV APAR G +AP+ VV+
Sbjct: 67  RIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVV 126

Query: 444 PAHNTGLGPEKTSFFQALSIPTKISKGTIEIISDVHILKPGDKVGASEA 590
              NTGL P +TSFFQ L+IPTKI+KGT+EII+ V ++K GDKVG+SEA
Sbjct: 127 QPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEA 175


>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
           contains similarity to 60S acidic ribosomal protein
           GI:5815233 from [Homo sapiens]
          Length = 235

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 35/176 (19%), Positives = 78/176 (44%), Gaps = 3/176 (1%)
 Frame = +3

Query: 72  KMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNT 251
           K GRE K    +     I + +++Y   ++   +N+ + + ++ R   R +    +G N 
Sbjct: 17  KKGREHKECIVNG----IREAVEKYSSVYVFSFENMRNIKFKEFRQQFRHNGKFFLGSNK 72

Query: 252 MMRKAIKDHLETN--PALEKLLPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIA 425
           +M+ A+    E      + K+   ++G+ G + T     +V       +    +R G+IA
Sbjct: 73  VMQVALGRSAEDELRSGIYKVSKLLRGDTGLLVTDMPKEEVESLFNAYEDSDFSRTGSIA 132

Query: 426 PLSVVIPAHNTG-LGPEKTSFFQALSIPTKISKGTIEIISDVHILKPGDKVGASEA 590
             +V +          E     + L +P +++KGT+E+++D  + + G ++    A
Sbjct: 133 VETVELKEGPLEQFTHEMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSA 188


>At3g50610.1 68416.m05534 hypothetical protein
          Length = 229

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 273 DHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRD-KLLENKVQAPARPGAIAPLSVVIPA 449
           D + T+P     + H KGNV     + D       KLL+  VQ   + G+    +   P 
Sbjct: 31  DFVPTSPGNSPGVGHKKGNVNVEGFQDDFKPTEGRKLLKTNVQDHFKTGSTDDFAPTSPG 90

Query: 450 HNTGLGPEK 476
           H+ G+G +K
Sbjct: 91  HSPGVGHKK 99


>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1147

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = -2

Query: 128 DDFNEVIGLPGSLVLPTHLGLSEVGTSEKFKDKTNTHRPLPR 3
           DDF E+      LV    LGLS +G+S K +DK    + +PR
Sbjct: 363 DDFKELAFEVAELVGSLPLGLSVLGSSLKGRDKDEWVKMMPR 404


>At4g14620.1 68417.m02250 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 341

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -2

Query: 569 ITRLQDMDITDNFNSTL*NLSGDG--KSLE-ERSLLRTKASVMSGNDDRQWSNGSRTSR 402
           + RL D   T   NS    +SGDG     E E SL +   + M  N+D+Q  NG  T R
Sbjct: 28  LKRLLDRPFTRISNSEKLLISGDGVVAGTEFEPSLAKMVQNYMEENNDKQTKNGRNTHR 86


>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
           protein similar to Sin3 protein [Yarrowia lipolytica]
           GI:18076824; contains Pfam profile PF02671: Paired
           amphipathic helix repeat
          Length = 1173

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 192 MQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKLLPHIKGNVGFV 341
           +++I++  +G+  +L+G NT + K  K  L       K+    K  +GFV
Sbjct: 124 IERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFV 173


>At4g22580.1 68417.m03258 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 435

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 455 HWPWS*EDFFLPGSFHPH 508
           +WPW  +    P SFHPH
Sbjct: 213 YWPWQEQAVPYPTSFHPH 230


>At3g21340.1 68416.m02695 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 880

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 252 MMRKAIKDHLETNPALEKLLPHIKGNVGFVFTRGDLVDVRDKLL 383
           ++ + I + L  N + EK  PHI   VG + T+GD+ ++ D  L
Sbjct: 764 VLLEIITNQLVINQSREK--PHIAEWVGLMLTKGDIQNIMDPKL 805


>At4g18880.1 68417.m02784 heat shock transcription factor 21 (HSF21)
           identical to heat shock transcription factor 21
           [Arabidopsis thaliana] GI:3399765; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 401

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 43  FSEVPTSLNPRWVGRTRLPGSPITSLKSSNCWTNTQNVS 159
           FSE P S   R V   R        +++  CW N++NV+
Sbjct: 348 FSENPGSTEQREVQLERKDDKDKAGVRTEKCWWNSRNVN 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,223
Number of Sequences: 28952
Number of extensions: 341193
Number of successful extensions: 996
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)