Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J24
(293 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 112 9e-27
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 105 1e-24
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 62 1e-11
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 55 2e-09
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.062
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.33
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 1.0
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 1.3
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 25 1.8
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 2.3
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 2.3
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 4.0
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 4.0
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 24 5.3
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 24 5.3
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 23 7.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 23 7.1
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 23 7.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 23 7.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 23 9.3
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 23 9.3
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 23 9.3
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 112 bits (270), Expect = 9e-27
Identities = 48/70 (68%), Positives = 56/70 (80%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 263 HVPRAVFVDL 292
+VPR+++VDL
Sbjct: 61 YVPRSIYVDL 70
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 105 bits (252), Expect = 1e-24
Identities = 52/75 (69%), Positives = 57/75 (76%), Gaps = 5/75 (6%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 247
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 248 TGAGKHVPRAVFVDL 292
TG GK VPR+++VDL
Sbjct: 60 TGQGKFVPRSIYVDL 74
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 62.5 bits (145), Expect = 1e-11
Identities = 29/69 (42%), Positives = 43/69 (62%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 265
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 266 VPRAVFVDL 292
+PRA+ +DL
Sbjct: 61 IPRAILIDL 69
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 55.2 bits (127), Expect = 2e-09
Identities = 28/70 (40%), Positives = 36/70 (51%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 263 HVPRAVFVDL 292
+VPRAV VDL
Sbjct: 59 YVPRAVLVDL 68
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.3 bits (65), Expect = 0.062
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 123 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSIL 293
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVV 216
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.33
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +3
Query: 102 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPS 281
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 282 SS 287
+
Sbjct: 72 EA 73
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 1.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 204 PSGVETTPSTRSSARPELASTFPV 275
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 1.3
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 117 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSIL 293
P S S + LST+S ++ T SG PST SS+ P +S P +S+L
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST-SSSTPS-SSIISSPMTSVL 539
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.4 bits (53), Expect = 1.8
Identities = 16/69 (23%), Positives = 29/69 (42%)
Frame = +3
Query: 66 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 245
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 246 RPELASTFP 272
+ + T P
Sbjct: 142 KKIESITIP 150
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 2.3
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 212 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 117
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 2.3
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -2
Query: 241 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 113
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 4.0
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +3
Query: 72 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 245
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 4.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 241 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 101
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 23.8 bits (49), Expect = 5.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 172 DAVLKAIQLPAGISDLDSGLANV 104
+AVLK I GI + D+GLA +
Sbjct: 55 EAVLKRINDTVGIKESDTGLAPI 77
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 23.8 bits (49), Expect = 5.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 192 QLTRPSGVETTPSTRSSARPELASTF 269
Q T PSG +TPST + +L T+
Sbjct: 117 QFTTPSGPVSTPSTYVATYNDLPCTY 142
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 23.4 bits (48), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 190 HLTIRLDAVLKAIQLPAG-ISDLDSGLANVYRDALTHFVLSF 68
H I+ D L I ++ +D GLA YRD TH + +
Sbjct: 128 HRDIKPDNFLMGIGKRGNQVNIIDFGLAKKYRDHKTHLHIPY 169
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 23.4 bits (48), Expect = 7.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 143 WELYCLEHGIQPDGQMPTDKTI 208
WELYC E G +M KTI
Sbjct: 289 WELYCQEAGGIIGDEMGLGKTI 310
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 91 VHLCTRWPSRSPDRK 135
+H WPSR+P RK
Sbjct: 3 LHDAYHWPSRTPSRK 17
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 23.4 bits (48), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 31 RLINLFYLHLSSKNSIQNA*VHLC 102
+L N+F H ++ IQ A H+C
Sbjct: 199 QLCNIFVNHSKAREDIQKAVNHIC 222
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 23.0 bits (47), Expect = 9.3
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = -2
Query: 172 DAVLKAIQLPAGISDLDS 119
DAV KAIQL SDL S
Sbjct: 241 DAVSKAIQLVKSTSDLGS 258
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 23.0 bits (47), Expect = 9.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -3
Query: 273 RGTCLPAPVSLKNVLKESSPPP 208
RG +P P S+ + S PPP
Sbjct: 43 RGLTIPPPPSVDHSAPPSGPPP 64
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 23.0 bits (47), Expect = 9.3
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 75 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPST-RSSARP 251
N+ S +T + + S +P S S+ S+++ T SG TT SSA
Sbjct: 642 NSTVAPTSTFTSSGFNTTSGLPTSSASTPSSNSSIVPTSTFTS-SGFNTTSGLPTSSAST 700
Query: 252 ELASTFPVPSSS 287
L+++ P+S+
Sbjct: 701 PLSNSTVAPTST 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,265,415
Number of Sequences: 5004
Number of extensions: 24559
Number of successful extensions: 97
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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