Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J24
(293 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 154 8e-39
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 154 8e-39
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 153 2e-38
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 153 2e-38
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 136 3e-33
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 136 3e-33
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 129 3e-31
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 62 6e-11
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 62 6e-11
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 62 8e-11
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 61 1e-10
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 61 1e-10
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 60 3e-10
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 60 3e-10
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 59 4e-10
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 59 4e-10
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 58 1e-09
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 57 2e-09
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:... 29 0.54
At4g14510.1 68417.m02236 expressed protein contains Pfam domain,... 28 0.94
At1g75400.1 68414.m08759 expressed protein 28 0.94
At3g13330.1 68416.m01678 expressed protein 27 1.6
At5g47020.1 68418.m05795 glycine-rich protein strong similarity ... 27 2.9
At3g44340.1 68416.m04764 sec23/sec24 transport family protein co... 27 2.9
At5g26760.2 68418.m03189 expressed protein 26 3.8
At5g26760.1 68418.m03188 expressed protein 26 3.8
At2g35610.1 68415.m04365 expressed protein 26 3.8
At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-prote... 26 5.0
At5g58670.1 68418.m07351 phosphoinositide-specific phospholipase... 26 5.0
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 26 5.0
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 26 5.0
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 26 5.0
At3g10000.1 68416.m01200 DNA-binding protein-related similar to ... 26 5.0
At2g06645.1 68415.m00740 expressed protein 26 5.0
At5g24480.1 68418.m02885 hypothetical protein similar to unknown... 25 6.6
At5g22490.1 68418.m02625 condensation domain-containing protein ... 25 6.6
At5g20060.2 68418.m02389 phospholipase/carboxylesterase family p... 25 6.6
At5g20060.1 68418.m02388 phospholipase/carboxylesterase family p... 25 6.6
At3g26900.1 68416.m03366 shikimate kinase family protein similar... 25 6.6
At3g11760.1 68416.m01443 expressed protein 25 6.6
At2g32620.1 68415.m03982 cellulose synthase family protein simil... 25 6.6
At5g16590.1 68418.m01942 leucine-rich repeat transmembrane prote... 25 8.7
At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR... 25 8.7
At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM do... 25 8.7
At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger) fa... 25 8.7
At3g46220.1 68416.m05003 expressed protein 25 8.7
At2g06570.1 68415.m00729 hypothetical protein 25 8.7
At1g73200.1 68414.m08471 expressed protein 25 8.7
At1g67520.1 68414.m07692 lectin protein kinase family protein co... 25 8.7
At1g58227.1 68414.m06616 hypothetical protein 25 8.7
At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein / ... 25 8.7
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 154 bits (374), Expect = 8e-39
Identities = 63/70 (90%), Positives = 70/70 (100%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 154 bits (374), Expect = 8e-39
Identities = 63/70 (90%), Positives = 70/70 (100%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP+DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 153 bits (371), Expect = 2e-38
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 153 bits (371), Expect = 2e-38
Identities = 63/70 (90%), Positives = 69/70 (98%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQMP DKT+GGGDD+FNTFFSETGAGK
Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 136 bits (328), Expect = 3e-33
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 136 bits (328), Expect = 3e-33
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSETGAGK
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGMMPSDTTVGVAHDAFNTFFSETGAGK 60
Query: 263 HVPRAVFVDL 292
HVPRAVFVDL
Sbjct: 61 HVPRAVFVDL 70
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 129 bits (312), Expect = 3e-31
Identities = 52/70 (74%), Positives = 63/70 (90%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE IS+H+GQAG+Q+GN+CWELYCLEHGIQPDG MP+D T+G D+FNTFFSET +G+
Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQ 60
Query: 263 HVPRAVFVDL 292
HVPRAVF+DL
Sbjct: 61 HVPRAVFLDL 70
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 263 HVPRAVFVDL 292
VPRAV +DL
Sbjct: 59 FVPRAVLMDL 68
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 62.1 bits (144), Expect = 6e-11
Identities = 29/70 (41%), Positives = 40/70 (57%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI P G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDL--QLERINVYYNEASCGR 58
Query: 263 HVPRAVFVDL 292
VPRAV +DL
Sbjct: 59 FVPRAVLMDL 68
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 61.7 bits (143), Expect = 8e-11
Identities = 31/70 (44%), Positives = 40/70 (57%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI GQ D + + N +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICGEHGIDQTGQSCGDTDL--QLERINVYFNEASGGK 58
Query: 263 HVPRAVFVDL 292
+VPRAV +DL
Sbjct: 59 YVPRAVLMDL 68
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 61.3 bits (142), Expect = 1e-10
Identities = 29/70 (41%), Positives = 42/70 (60%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + V GQ G QIG+ WE+ C EHG+ P G+ D + + N +++E G+
Sbjct: 1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGRYNGD-SADLQLERINVYYNEASGGR 59
Query: 263 HVPRAVFVDL 292
+VPRAV +DL
Sbjct: 60 YVPRAVLMDL 69
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 60.9 bits (141), Expect = 1e-10
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGD---DSFNTFFSETG 253
MRE + + GQ G QIG+ WE+ C EHGI P G + +G D + N +++E
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTG-----RYVGNSDLQLERVNVYYNEAS 55
Query: 254 AGKHVPRAVFVDL 292
G++VPRA+ +DL
Sbjct: 56 CGRYVPRAILMDL 68
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/70 (42%), Positives = 40/70 (57%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI GQ D + + + +F+E GK
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGQYVGDSPL--QLERIDVYFNEASGGK 58
Query: 263 HVPRAVFVDL 292
+VPRAV +DL
Sbjct: 59 YVPRAVLMDL 68
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 60.1 bits (139), Expect = 3e-10
Identities = 29/70 (41%), Positives = 41/70 (58%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG+ WE+ C EHGI G+ D T + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVICDEHGIDSTGRYSGD-TADLQLERINVYYNEASGGR 59
Query: 263 HVPRAVFVDL 292
+VPRAV +DL
Sbjct: 60 YVPRAVLMDL 69
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 265
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 266 VPRAVFVDL 292
+PRA+ +DL
Sbjct: 61 IPRALLIDL 69
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/69 (43%), Positives = 40/69 (57%)
Frame = +2
Query: 86 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 265
RE I++ VGQ G QIG W+ CLEHGI DG + T GG D + FF + +
Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGILEDFATQGG--DRKDVFFYQADDQHY 60
Query: 266 VPRAVFVDL 292
+PRA+ +DL
Sbjct: 61 IPRALLIDL 69
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 57.6 bits (133), Expect = 1e-09
Identities = 28/70 (40%), Positives = 41/70 (58%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG+ WE+ LEHGI G+ D + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGSKFWEVVNLEHGIDQTGRYVGDSEL--QLERVNVYYNEASCGR 58
Query: 263 HVPRAVFVDL 292
+VPRAV +DL
Sbjct: 59 YVPRAVLMDL 68
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 56.8 bits (131), Expect = 2e-09
Identities = 27/70 (38%), Positives = 39/70 (55%)
Frame = +2
Query: 83 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 262
MRE + + GQ G QIG WE+ C EHGI G+ + + + N +++E G+
Sbjct: 1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGENDL--QLERVNVYYNEASCGR 58
Query: 263 HVPRAVFVDL 292
VPRAV +DL
Sbjct: 59 FVPRAVLMDL 68
>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
GP:4586626
Length = 1207
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 232 VEGVVSTPDGLVSWHLTIR--LDAVLKAIQLP 143
+ G+ PDG SWH+T+ +D+ L + LP
Sbjct: 272 IAGISQVPDGEASWHVTVSKYMDSPLLSAALP 303
>At4g14510.1 68417.m02236 expressed protein contains Pfam domain,
PF04581: Protein of unknown function (DUF578)
Length = 932
Score = 28.3 bits (60), Expect = 0.94
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 161 EHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDL 292
E GIQ +G + ++ + G D +T F + A P FV+L
Sbjct: 881 EGGIQANGSL-SETDVEFGSDESDTDFGDNSASSTTPETTFVEL 923
>At1g75400.1 68414.m08759 expressed protein
Length = 455
Score = 28.3 bits (60), Expect = 0.94
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 198 TRPSGVETTPSTRSSARPELASTFPVPSSS 287
T P G TP+++ SA PE+++ VP SS
Sbjct: 83 TPPDGHLGTPASQKSATPEMSTNSMVPPSS 112
>At3g13330.1 68416.m01678 expressed protein
Length = 1711
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 60 KFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNL 179
++ +L +KCV + L KP+ + + GSC LS+ S L
Sbjct: 938 RWPQLLSKCVLSLTENLRKPDVQEYVVLGSCAILSSHSVL 977
>At5g47020.1 68418.m05795 glycine-rich protein strong similarity to
unknown protein (emb|CAB87688.1)
Length = 1417
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = +3
Query: 72 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQ-LTRPSGVETTPSTRSSAR 248
++T C S S Y + + ES + + ST+S + V CQ L + TT + S+ R
Sbjct: 12 VSTPCFSLSQYGVTEFESSVRLFSDEASGNSTSSPISVTCQDLDGVGSLNTTCTLNSNLR 71
>At3g44340.1 68416.m04764 sec23/sec24 transport family protein
contains Pfam domains PF04811: Sec23/Sec24 trunk domain,
PF04815: Sec23/Sec24 helical domain and PF04810:
Sec23/Sec24 zinc finger
Length = 1096
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -2
Query: 280 DGTGNVLASSGLAEERVEGVVSTPDGLVSWHLTIR 176
D GN+L S + E+R G S D LVS H I+
Sbjct: 1058 DPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQ 1092
>At5g26760.2 68418.m03189 expressed protein
Length = 735
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 232 VEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRD-ALTHFVLSF 68
V+G+ S ++ L L V+ ++LP IS+L+ GL ++ +LT V SF
Sbjct: 613 VDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSF 668
>At5g26760.1 68418.m03188 expressed protein
Length = 430
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 232 VEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRD-ALTHFVLSF 68
V+G+ S ++ L L V+ ++LP IS+L+ GL ++ +LT V SF
Sbjct: 308 VDGLSSEIKQTIAGCLARALPRVVTHLRLPIAISELEKGLGSLLETMSLTGAVPSF 363
>At2g35610.1 68415.m04365 expressed protein
Length = 644
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 197 QLASDHQVGCRAQGNTAPSR 138
QL + + GC A NT+PSR
Sbjct: 529 QLCQEGKEGCEASNNTSPSR 548
>At5g66680.1 68418.m08406 dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kDa subunit family protein similar
to SP|Q05052 Dolichyl-diphosphooligosaccharide--protein
glycosyltransferase 48 kDa subunit precursor (EC
2.4.1.119) (Oligosaccharyl transferase 48 kDa subunit)
{Canis familiaris}; contains Pfam profile PF03345:
Dolichyl-diphosphooligosaccharide-protein
glycosyltransferase 48kD subunit
Length = 437
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3
Query: 144 GSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELAST 266
G +L+ +NL+++ PS PS++ S+ P+L +
Sbjct: 186 GVAHSLNPTNNLVLKVLSASPSAYSANPSSKLSSPPQLTGS 226
>At5g58670.1 68418.m07351 phosphoinositide-specific phospholipase C
(PLC1) identical to phosphoinositide specific
phospholipase C [Arabidopsis thaliana] GI:902923
Length = 561
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 264 CLPAPVSLKNVLKESSPPP 208
C P+P SLKN + S+ PP
Sbjct: 233 CFPSPESLKNKILISTKPP 251
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 105 TLAKPESRSEMPAGSCIALSTA--SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPV 275
TL P S + C ++ SN V RP+G PST +S P T V
Sbjct: 101 TLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVV 159
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 105 TLAKPESRSEMPAGSCIALSTA--SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPV 275
TL P S + C ++ SN V RP+G PST +S P T V
Sbjct: 106 TLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVV 164
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 25.8 bits (54), Expect = 5.0
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Frame = +3
Query: 105 TLAKPESRSEMPAGSCIALSTA--SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPV 275
TL P S + C ++ SN V RP+G PST +S P T V
Sbjct: 101 TLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPSTSTSTPPSQTQTVVV 159
>At3g10000.1 68416.m01200 DNA-binding protein-related similar to
GT-2 factor [Arabidopsis thaliana GI:416490
Length = 496
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Frame = +2
Query: 170 IQPDGQMPTDKTIGGGDDSF---NTFFSETGAGK 262
I+PD PT++ G G D N F E GK
Sbjct: 360 IRPDSSSPTERINGNGSDKMMADNEFADEGNKGK 393
>At2g06645.1 68415.m00740 expressed protein
Length = 163
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 191 PTDKTIGGGDDSFNTFFSETGAGKHVPRAV 280
PT +T G DD +FS G HV AV
Sbjct: 83 PTTETNGDVDDGAGKYFSSEVEGVHVELAV 112
>At5g24480.1 68418.m02885 hypothetical protein similar to unknown
protein (gb|AAD32930.1)
Length = 350
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 189 CQLTRPSGVETTPSTRSSARPELASTF 269
C LT G + P+T S +P ASTF
Sbjct: 21 CSLTSDRGQRSWPATLPSPQPLSASTF 47
>At5g22490.1 68418.m02625 condensation domain-containing protein
contains Pfam profile PF00668: Condensation domain
Length = 482
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +3
Query: 180 MVRCQLTRPSGVETTP----STRSSARPELASTFPVP 278
++RC GV STR ++ PE ST PVP
Sbjct: 135 VIRCHHALGDGVSILSLILASTRKTSEPEAFSTLPVP 171
>At5g20060.2 68418.m02389 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 219 SPPPMVLSVGI*PSGWMPCSR 157
+P P+ LS I SGW+PC++
Sbjct: 149 NPYPINLSAIIGLSGWLPCAK 169
>At5g20060.1 68418.m02388 phospholipase/carboxylesterase family
protein similar to lysophospholipase II [Mus musculus]
GI:4589453; contains Pfam profile PF02230:
Phospholipase/Carboxylesterase family
Length = 252
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -3
Query: 219 SPPPMVLSVGI*PSGWMPCSR 157
+P P+ LS I SGW+PC++
Sbjct: 149 NPYPINLSAIIGLSGWLPCAK 169
>At3g26900.1 68416.m03366 shikimate kinase family protein similar to
shikimate kinase precursor GB:CAA45121 [Lycopersicon
esculentum]; contains Pfam shikimate kinase domain
PF01202
Length = 280
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 149 LYCLEHGIQPDGQMPTDKTIGGGDDSFNT 235
L L HGI +P D T G DDSF++
Sbjct: 177 LALLRHGISIWIDVPLDITAKGDDDSFHS 205
>At3g11760.1 68416.m01443 expressed protein
Length = 702
Score = 25.4 bits (53), Expect = 6.6
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +3
Query: 147 SCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSS 287
+C+A T L V L + TTP T SA P+PS S
Sbjct: 154 ACVASETHPLLFVSLSLLE---LRTTPETSDSAAQTAVVPLPLPSPS 197
>At2g32620.1 68415.m03982 cellulose synthase family protein similar
to Zea mays cellulose synthase-5 [gi:9622882], -4
[gi:9622880], -9 [gi:9622890]
Length = 757
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 92 CISVHVGQAGVQIGNACWELYCLEHGIQ 175
C+ + + AG+ WE CL H IQ
Sbjct: 569 CLGITMLLAGMHCLYTLWEFMCLGHSIQ 596
>At5g16590.1 68418.m01942 leucine-rich repeat transmembrane protein
kinase, putative
Length = 625
Score = 25.0 bits (52), Expect = 8.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 258 PAPVSLKNVLKESSPPPMVLSVGI*PSG 175
P P S V KES+ PP V++ G +G
Sbjct: 287 PVPTSSAAVAKESNGPPAVVANGASENG 314
>At4g16920.1 68417.m02552 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1304
Score = 25.0 bits (52), Expect = 8.7
Identities = 23/85 (27%), Positives = 34/85 (40%)
Frame = -2
Query: 262 LASSGLAEERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVYRDALTH 83
L S GLA + + D + + A LP G+S L S L +D
Sbjct: 337 LPSQGLALQMISQYAFGKDSPPDDFKALAFEVAELAGSLPLGLSVLGSSLKGRDKDEWVK 396
Query: 82 FVLSFLNLSVDKIN*SVVVQRDQLS 8
+ N S DKI ++ V D+L+
Sbjct: 397 MMPRLRNDSDDKIEETLRVCYDRLN 421
>At4g16310.1 68417.m02473 amine oxidase family protein / SWIRM
domain-containing protein low similarity to polyamine
oxidase isoform-1 [Homo sapiens] GI:14860862; contains
Pfam profiles PF01593: amine oxidase flavin-containing,
PF04433: SWIRM domain
Length = 1265
Score = 25.0 bits (52), Expect = 8.7
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = +3
Query: 120 ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELAST 266
ES S+ S I + S M Q + S VE P T S A+P L+ST
Sbjct: 547 ESISKKCEASIIDDNKRSVSMNALQDSTASNVEKHPETFSVAKPALSST 595
>At4g09120.1 68417.m01505 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 345
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Frame = -3
Query: 174 WMP-CSRQYSSQQAFPIWTPAWPTC 103
WMP CS + + +W +W TC
Sbjct: 138 WMPPCSHTFHAN-CIDVWLSSWSTC 161
>At3g46220.1 68416.m05003 expressed protein
Length = 530
Score = 25.0 bits (52), Expect = 8.7
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 66 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQL--TRPSGVETTPSTRS 239
K+ + + AS TL P S+S S A + + + + T+ + VET P
Sbjct: 108 KEADAFSIQASTATLIHPSSKSSESTESIPANTDKGSKKKKGKSASTKAATVETVPDDEE 167
Query: 240 SARPE 254
ARP+
Sbjct: 168 DARPK 172
>At2g06570.1 68415.m00729 hypothetical protein
Length = 277
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 191 PTDKTIGGGDDSFNTFFSETGAGKHVPRAV 280
PT +T G DD +FS G HV AV
Sbjct: 142 PTIETNGDVDDGAGKYFSSEVEGVHVELAV 171
>At1g73200.1 68414.m08471 expressed protein
Length = 779
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 291 RSTKTARGTCLPAPVSLKNVLKESSPPPMVLSVGI 187
+ TKT LKN++++ S P+ LS+G+
Sbjct: 492 KGTKTGSSNGSKWKSMLKNIVEQVSQVPITLSIGV 526
>At1g67520.1 68414.m07692 lectin protein kinase family protein
contains Pfam domains PF00069: Protein kinase domain and
PF01453: Lectin (probable mannose binding)
Length = 587
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +2
Query: 209 GGGDDSFNTFFSETGAGKHVPRAVFV 286
G G + +NT+ + G+ H PR +++
Sbjct: 350 GTGCEIWNTYPTNKGSASHSPRTIYI 375
>At1g58227.1 68414.m06616 hypothetical protein
Length = 1323
Score = 25.0 bits (52), Expect = 8.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 268 NVLASSGLAEERVEGVVST 212
NV++SSG AE+ VE +S+
Sbjct: 811 NVISSSGFAEQLVEDAISS 829
>At1g10050.1 68414.m01133 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to GB:AAD27896 to endoxylanases gi|1255238
(Thermoanaerobacterium thermosulfurigenes), gi|1813595
(Hordeum vulgare) and others ; contains Pfam profiles
PF00331: Glycosyl hydrolase family 10, PF02018:
Carbohydrate binding domain
Length = 1063
Score = 25.0 bits (52), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 57 LKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASN 176
LKF L+ +S + T+ ++R+ P GSCI+ S N
Sbjct: 700 LKFSGLDPSELSGA--TVKIRQTRNSFPLGSCISRSNIDN 737
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,887,669
Number of Sequences: 28952
Number of extensions: 142365
Number of successful extensions: 550
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 271185840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -