Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J23
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.64
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.5
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.6
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 26 3.4
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.0
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.0
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.64
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 332 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 439
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -1
Query: 369 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 226
V+R + SGS+ G S SA A S SLA + P+ A C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 434 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 562
DIV F ++ K + +T+LVD SK +T+I YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 1.5
Identities = 22/110 (20%), Positives = 47/110 (42%)
Frame = +2
Query: 239 IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 418
+ + D A+D + + ++ LA L +PDA AD P +V +L
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141
Query: 419 PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 568
+ + ++ + ++ D+ L L+ K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.6
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = -1
Query: 522 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 355
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 354 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 259
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 3.4
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Frame = +3
Query: 12 HTMTSDYLTERSAHLRVNLATHIA--WRAA--VLKSRL---PSTPTTRCTLLCHQPVNR 167
H M+ D LT+ + NL T IA W + K L P+ PTT+C L C + + R
Sbjct: 45 HLMSIDDLTKVKDNAPENLQTIIAVLWDKLEDLQKETLFDDPAAPTTKCALNCMRLLTR 103
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 381 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 256
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -3
Query: 421 WHFELINVSDGVRLVRVGAAHASVRQ 344
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 348 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 244
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,473
Number of Sequences: 5004
Number of extensions: 45390
Number of successful extensions: 131
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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