Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J23
         (576 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.51 
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)                    31   0.51 
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)                  31   0.89 
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)                    29   2.7  
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)                  29   2.7  
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)                       29   3.6  
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)                29   3.6  
SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)                  28   6.3  
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)                        28   6.3  
SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.3  
SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)                 27   8.3  

>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 11  PYDDFRLPNGKICTSESEFGNAYSL 85
           P DDF + NG+   S+ EFG ++SL
Sbjct: 191 PSDDFMMKNGRYARSDREFGKSWSL 215


>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1184

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -1

Query: 348 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNN 205
           GS   S  +  S   PLA  + +CK   A VP+T W+    +G I  N
Sbjct: 449 GSGKTSLLLTISGELPLASGELYCKGRVAYVPETPWL---FSGTIKEN 493


>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
          Length = 1420

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +2

Query: 461 QSNEQSYKDLVMPLITQLVDNLKSKQITD 547
           + N+Q Y+DL +P+ + L  N++ KQ+ +
Sbjct: 293 KGNKQQYRDLEIPISSDLAANMREKQVAE 321


>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
          Length = 567

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 24/69 (34%), Positives = 29/69 (42%)
 Frame = -3

Query: 457 SFEGDDNICLLVWHFELINVSDGVRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTGLV 278
           SF  DD+ C + W        DG   V      A+  +  R  SREG    SS +V GL 
Sbjct: 190 SFPWDDHHCRISWR------GDGQYFVVSAIEPATDARKLRVWSREGVLMTSSEEVDGLE 243

Query: 277 QVLSGVCSG 251
           Q L    SG
Sbjct: 244 QSLCWKPSG 252


>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
          Length = 806

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
 Frame = +2

Query: 149 PPACEQVFGGISPLRPISLLLDITPFRQACIHAV---SGTDAAKDLHQACDLARGYAALA 319
           PP C Q +  + PLR  +  + I       I  V   +     K    +  L  G     
Sbjct: 238 PPECAQYYSPVQPLRSCAEFIMIAEAALVFIAVVVLANLVSLIKRKLSSLHLPPGPQPYP 297

Query: 320 LTGLLPAVL-PDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYKDLVM 496
           L G LP ++ P   +  T+  K +  G +Y L +P +Q  ++ S E  +    + KD   
Sbjct: 298 LVGNLPHLVGPLMPLAMTELAKKY--GKIYSLTLPGQQCVVLNSSELAREALLTRKDEFS 355

Query: 497 PLITQLVDNLKSKQITDIKIYLAGHT 574
              +  V +  ++   D  I  A HT
Sbjct: 356 GRPSTFVGDFITRSSAD--IICADHT 379


>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +2

Query: 410 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHT 574
           ++V     D+V  FET  +NE   +  + P     V  L  K   D K    GHT
Sbjct: 1   MEVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHT 55


>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
          Length = 569

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +1

Query: 172 RRNLPTSANQSIIRYHTIQTSVHPRGVRNRRR 267
           RRNLPT  N S I    + T    R  R RRR
Sbjct: 197 RRNLPTHDNTSTITPEAVATQAPQRRRRRRRR 228


>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
          Length = 298

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 16/36 (44%)
 Frame = +3

Query: 99  LKSRLPSTPTTRCTLLCHQPVNRCSEESPHFGQSVY 206
           LK     +PT +C   C    N    +  HFGQS Y
Sbjct: 199 LKPCKGDSPTPKCERKCEAGYNVSYSDDKHFGQSAY 234


>SB_51924| Best HMM Match : PALP (HMM E-Value=3.1e-05)
          Length = 407

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 111 VWTLGQLRARLYALPNSLSDVQI 43
           VW LGQ+   L+    S+SDVQ+
Sbjct: 74  VWALGQVAGSLWMATTSVSDVQV 96


>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
          Length = 400

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +2

Query: 305 YAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYK 484
           Y AL +T        D C+  +  D   AIGD   ++VP K+ DI  S      N  +  
Sbjct: 20  YKALTVTHKQSFKYNDTCLNYSSKDVVMAIGDA--IEVPLKEEDISTSHPLPSYNPNAPP 77

Query: 485 DLVMPLI 505
            +++  +
Sbjct: 78  KIIVKFV 84


>SB_47706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 102 KSRLPSTPTTRCTLLCHQPVNRCSEESPHF 191
           +SRL   P+    LL H P+N CS    +F
Sbjct: 441 QSRLFDRPSPEALLLSHGPLNACSRAVKYF 470


>SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 327 PVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRL 199
           P  +SA +PLA +Q    ++ + VP  + +H  +NG    N +
Sbjct: 31  PWASSAGWPLAINQDNSSNINSLVPSISVLHISVNGEFHENNV 73


>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
          Length = 1338

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 150 HQPVNRCSEESPHFGQSVYY*ISHHSDKRASTRCPEQTPL 269
           H+P++     S  F     +  +  ++K  S  CPEQTP+
Sbjct: 684 HKPISPHGLSSKDFSLIFDFGENSRAEKTVSINCPEQTPI 723


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,699,944
Number of Sequences: 59808
Number of extensions: 389589
Number of successful extensions: 1158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)