Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J23
(576 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 29 3.1
AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated... 29 3.1
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 29 3.1
U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 27 9.5
U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 27 9.5
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 27 9.5
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397
>AF003131-5|AAV34799.1| 5992|Caenorhabditis elegans Uncoordinated
protein 89, isoform e protein.
Length = 5992
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 3757
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397
>AF003131-2|AAV34800.1| 7441|Caenorhabditis elegans Uncoordinated
protein 89, isoform f protein.
Length = 7441
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 3714 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 3757
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 404 YQLKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSK 535
Y L++PN Q + ++ SN+ D L +L D+ K K
Sbjct: 4354 YSLEIPNAQVEDAADYKVVVSNDAGDADSSAALTVKLADDGKDK 4397
>U97593-7|AAB52878.1| 591|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform b protein.
Length = 591
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 475
R Y T +P++ P V D + DV+ K N+ + F T + E
Sbjct: 464 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 523
Query: 476 SYKD 487
Y+D
Sbjct: 524 GYRD 527
>U97593-6|AAB52879.2| 925|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform c protein.
Length = 925
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 475
R Y T +P++ P V D + DV+ K N+ + F T + E
Sbjct: 798 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 857
Query: 476 SYKD 487
Y+D
Sbjct: 858 GYRD 861
>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
isoform a protein.
Length = 1175
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = +2
Query: 299 RGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVP-NKQADIVVSFETTQSNEQ 475
R Y T +P++ P V D + DV+ K N+ + F T + E
Sbjct: 1048 RNYEEKTETTTVPSLAPATNVTYKDLSNAQCVDDVFNKKTEMNESLPVGSVFNTHNNTEG 1107
Query: 476 SYKD 487
Y+D
Sbjct: 1108 GYRD 1111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,242,712
Number of Sequences: 27780
Number of extensions: 276012
Number of successful extensions: 748
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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