Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J22
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 202 3e-53
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 202 3e-53
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 1.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.0
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.7
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.2
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 8.2
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 25 8.2
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 202 bits (493), Expect = 3e-53
Identities = 94/160 (58%), Positives = 112/160 (70%)
Frame = +2
Query: 104 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 283
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 284 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 463
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 464 VAQDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHKHRE 583
V QD++YK+FEVIL+DPSH AIRRDP+INWIVN VHKHRE
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 202 bits (493), Expect = 3e-53
Identities = 94/160 (58%), Positives = 112/160 (70%)
Frame = +2
Query: 104 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 283
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 284 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 463
I+RI TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 464 VAQDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHKHRE 583
V QD++YK+FEVIL+DPSH AIRRDP+INWIVN VHKHRE
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRE 160
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 470 QDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHK 574
+ S KY E P H+ + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 190 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 104
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 208 TSQLAILPHSYTQEKSHNIAQLFPIQLL 125
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 387 LATCSLLLRSVLVAGVVVYACLIHTG 464
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.0 bits (52), Expect = 8.2
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -2
Query: 166 KSHNIAQLFPIQLLYISVRAHLDESVIDFSLVPIHAARGSTVLER 32
+S N Q+ LL +S A+ + ++PI GSTVL R
Sbjct: 867 RSTNNPQIQNKALLLVSALANAAPEAVLHGVMPIFTFMGSTVLSR 911
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.0 bits (52), Expect = 8.2
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
Frame = -2
Query: 313 ATTAHADSEDNITLLGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKSHNIA-QLFP 137
A+T + N+ + G S P W SAV ++ S N + P
Sbjct: 771 ASTVSRNPFHNLKISGA-SSPVSNFWESEFASAVFPRSISKTTSLSVNNSSVNPSLDSEP 829
Query: 136 IQLLYISVRAHLDESVIDFSLVPIHAARGSTVL 38
+QL + H D SV+D S + RGS VL
Sbjct: 830 VQLSNMEEPQHQDSSVVDVSTSA--SQRGSPVL 860
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,966
Number of Sequences: 5004
Number of extensions: 46190
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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