Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J22
(587 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 199 1e-51
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 199 1e-51
At2g47820.1 68415.m05968 expressed protein 31 0.75
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl... 29 2.3
At5g09270.2 68418.m01072 expressed protein 28 4.0
At5g09270.1 68418.m01071 expressed protein 28 4.0
At3g56410.2 68416.m06274 expressed protein 28 4.0
At3g56410.1 68416.m06273 expressed protein 28 4.0
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 27 7.0
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi... 27 7.0
At1g59722.1 68414.m06722 hypothetical protein 27 7.0
At5g43570.1 68418.m05327 serine protease inhibitor, potato inhib... 27 9.3
At4g36630.2 68417.m05198 expressed protein 27 9.3
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 199 bits (486), Expect = 1e-51
Identities = 88/161 (54%), Positives = 113/161 (70%)
Frame = +2
Query: 104 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 283
MGAY+Y+ EL+RKK SDVMRFL R+R W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 284 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 463
++R+ YGKP + GV QLK R+ +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 464 VAQDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHKHREM 586
+ +DS+YKY+E+IL+DP+HNA+R DP+INWI N VHKHRE+
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHREL 161
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 199 bits (486), Expect = 1e-51
Identities = 88/161 (54%), Positives = 113/161 (70%)
Frame = +2
Query: 104 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 283
MGAY+Y+ EL+RKK SDVMRFL R+R W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 284 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 463
++R+ YGKP + GV QLK R+ +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 464 VAQDSSYKYFEVILIDPSHNAIRRDPKINWIVNAVHKHREM 586
+ +DS+YKY+E+IL+DP+HNA+R DP+INWI N VHKHRE+
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHREL 161
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 30.7 bits (66), Expect = 0.75
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = +3
Query: 249 EGLDTVPSKVMLSSESACA-----VVAVNAQC-PRELP-TAN--PRAMVSTN*NPLATCS 401
+G DTV + V+ +SES+CA V V QC P+EL TA+ P ST PL T +
Sbjct: 677 DGTDTVMADVVQNSESSCAEQSSVQVDVEKQCKPQELQVTADLLPERRQSTRTRPLTTKA 736
Query: 402 L 404
L
Sbjct: 737 L 737
>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
(FAD7) (FADD) identical to omega-3 fatty acid
desaturase, chloroplast precursor SP:P46310 [Arabidopsis
thaliana (Mouse-ear cress)]; identical to Pfam profile
PF00487: Fatty acid desaturase; identical to cDNA
plastid fatty acid desaturase GI:809491
Length = 446
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 458 YWVAQDSSYKYFEVILIDPSHNAIRRDPKINWIV 559
YW+AQ + + V+ D H + DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180
>At5g09270.2 68418.m01072 expressed protein
Length = 111
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 12 WTPPRWRRSRTVDPRAA*IGTRLKSITDSSRWART 116
WT RWR+ R + R + T+L+ + ++ + A T
Sbjct: 57 WTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVT 91
>At5g09270.1 68418.m01071 expressed protein
Length = 111
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 12 WTPPRWRRSRTVDPRAA*IGTRLKSITDSSRWART 116
WT RWR+ R + R + T+L+ + ++ + A T
Sbjct: 57 WTAYRWRKLRRTEDRVRGLQTKLRKLVENEQAAVT 91
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 217 RSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP*TPSAQGSY 342
RS + R W + R Y PR P++P +PS +Y
Sbjct: 193 RSSPYNTRSNAAQWAQHEGR--YADPPRVPFYPASPSPSSAY 232
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 217 RSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP*TPSAQGSY 342
RS + R W + R Y PR P++P +PS +Y
Sbjct: 146 RSSPYNTRSNAAQWAQHEGR--YADPPRVPFYPASPSPSSAY 185
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 179 RVWQYRQLTRMHRAPRPTRPD 241
++W+Y LTR++ P+ PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305
>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 700
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 230 WAWERGAYESTGDIATLLYAREIA*HRSTFSYTTPVYICTR 108
W +ER + S A ++ AR++ H TFS P+++ R
Sbjct: 62 WLYER-LFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNR 101
>At1g59722.1 68414.m06722 hypothetical protein
Length = 156
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -2
Query: 394 VASGFQLVDTMALGFAVG 341
VA+GF L+D LGF+VG
Sbjct: 55 VAAGFSLMDPFTLGFSVG 72
>At5g43570.1 68418.m05327 serine protease inhibitor, potato
inhibitor I-type family protein similar to SP|P24076 Glu
S.griseus protease inhibitor (BGIA) {Momordica
charantia}; contains Pfam profile PF00280: Potato
inhibitor I family
Length = 91
Score = 27.1 bits (57), Expect = 9.3
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +3
Query: 219 LPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRAMVSTN*NPLATC 398
L G RG+ +E +D +KV S AVV C R N + +V+ P++
Sbjct: 8 LVGRRGEEVKEIIDRENTKVTAKIISENAVVLAVVICDRVYVRVNDQGIVTR--TPISLA 65
Query: 399 SLLLRSVLVAGVVVYACL 452
+L+ V+ + +Y C+
Sbjct: 66 NLI---VIYIYIYIYICV 80
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 27.1 bits (57), Expect = 9.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2
Query: 181 SYTQEKSHNIAQLFPIQLLYISVRAHLDESVIDFSLVPIHAARGSTVLE 35
S T + ++ Q+F +L+ ++A + ++DFSL P+ VLE
Sbjct: 537 SKTNQSQTDVTQIFSPELIIEYLKADANFLLVDFSLQPLCRTDPMLVLE 585
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,016,045
Number of Sequences: 28952
Number of extensions: 255957
Number of successful extensions: 712
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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