Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J21
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    31   0.008
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    23   1.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    23   2.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.8  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    21   6.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.1 bits (67), Expect = 0.008
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
 Frame = +1

Query: 145 RCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFA 324
           RC+ CG+ F    +   +      EK + C  C     +KSF  +E        +  +  
Sbjct: 93  RCNICGKTFAVPARLTRHYRTHTGEKPYQCEYC-----SKSFSVKENLSVHRRIHTKERP 147

Query: 325 TRCVKCNKIITQGGVTYKNEPWH--RECFTCTHCNTSL--AGQRF----TSRDEKPYCAE 480
            +C  C +     G  +++   H       CT C+ +   +GQ      T   EKPY  +
Sbjct: 148 YKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGEKPYVCK 207

Query: 481 CFGELF--AKRCTSCTKPITG 537
             G+ F  +K+    T+  TG
Sbjct: 208 ACGKGFTCSKQLKVHTRTHTG 228



 Score = 27.1 bits (57), Expect = 0.13
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +1

Query: 148 CDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTK 264
           CD CG+ F        ++   + EK + C +C    G+K
Sbjct: 234 CDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSK 272


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 181 TKKMEYKTRQWHEKCFCCVV 240
           TK   +   QWH K F  V+
Sbjct: 66  TKNYPFDVDQWHNKTFLAVI 85


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 141 GELSIIAVAAVDLVQFGAKLLIHQGDAALGAEEA 40
           G L  +AV A+DL      +  H+GDA +  + A
Sbjct: 184 GGLVSLAVQAIDLANTLVYMADHKGDALIVYQNA 217


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +1

Query: 181 TKKMEYKTRQWHEKCFCCVVCKNPI 255
           TK       QWH K F  V+  N +
Sbjct: 67  TKNYPLDVDQWHNKTFLAVIRYNGV 91


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +1

Query: 328 RCVKCNKIITQGGVTYKNEPWH--RECFTCTHCNTSLA 435
           +C  C K  ++  +   +   H   + F+C HCN + A
Sbjct: 44  KCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 328 RCVKCNKIIT 357
           RC  CNKI+T
Sbjct: 4   RCEPCNKILT 13


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,143
Number of Sequences: 438
Number of extensions: 3587
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)