Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J21
(563 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 52 3e-07
At2g45800.1 68415.m05696 LIM domain-containing protein similar t... 49 2e-06
At3g61230.1 68416.m06852 LIM domain-containing protein similar t... 48 6e-06
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 45 3e-05
At1g01780.1 68414.m00097 LIM domain-containing protein similar t... 45 3e-05
At5g66610.1 68418.m08396 LIM domain-containing protein contains ... 44 5e-05
At4g36860.1 68417.m05226 LIM domain-containing protein low simil... 44 9e-05
At1g10200.1 68414.m01150 transcription factor LIM, putative stro... 42 2e-04
At3g55770.1 68416.m06197 LIM domain-containing protein similar t... 40 0.001
At2g39900.1 68415.m04904 LIM domain-containing protein similar t... 40 0.001
At5g66620.1 68418.m08397 LIM domain-containing protein contains ... 36 0.019
At5g66630.1 68418.m08398 LIM domain-containing protein contains ... 33 0.17
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 32 0.30
At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger) fa... 32 0.30
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 31 0.70
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 31 0.70
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 1.2
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa... 29 1.6
At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protei... 28 3.7
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.0
At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protei... 28 5.0
At1g36050.1 68414.m04479 expressed protein 28 5.0
At1g22200.1 68414.m02776 expressed protein 28 5.0
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t... 27 6.5
At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit... 27 6.5
At3g45830.1 68416.m04960 expressed protein 27 8.7
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 52.0 bits (119), Expect = 3e-07
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
Frame = +1
Query: 142 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 321
S+C C G Y + WH +CFCC+ C+ PI I + +Y CY++
Sbjct: 1238 SKCKDCKSAIEDGISINAYGS-VWHPQCFCCLRCREPIAMNE-ISDLRGMYHKPCYKELR 1295
Query: 322 ATRCVKCNKII--TQGGVTYKNEPWHRECFTCTH 417
C C K I T G+ Y P+ E + +H
Sbjct: 1296 HPNCYVCEKKIPRTAEGLKYHEHPFWMETYCPSH 1329
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Frame = +1
Query: 325 TRCVKCNKIITQG-GVTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFA 501
++C C I G + WH +CF C C +A + Y C+ EL
Sbjct: 1238 SKCKDCKSAIEDGISINAYGSVWHPQCFCCLRCREPIAMNEISDL-RGMYHKPCYKELRH 1296
Query: 502 KRCTSCTKPI 531
C C K I
Sbjct: 1297 PNCYVCEKKI 1306
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/68 (23%), Positives = 27/68 (39%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
WH CF C +CR + + S L +Y CY C C + + ++Y
Sbjct: 1260 WHPQCFCCLRCREPIAMNEI-SDLRGMYHKPCYKELRHPNCYVCEKKIPRTAEGLKYHEH 1318
Query: 208 QWHEKCFC 231
+ + +C
Sbjct: 1319 PFWMETYC 1326
>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 226
Score = 48.8 bits (111), Expect = 2e-06
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 1/161 (0%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H++CF C C+ +LV + S +YC ++ Q + F+AG KT
Sbjct: 30 YHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFE-QLFKESGNYSKNFQAG------KTE 82
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNK-IITQGGVTYKNE 384
+ ++ + + P SF Q+ +C C K + VT + E
Sbjct: 83 KPNDH-----LTRTPSKLSSFFSGTQD-------------KCATCKKTVYPLEKVTMEGE 124
Query: 385 PWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
+H+ CF CTH L + S + YC F +LF ++
Sbjct: 125 SYHKTCFRCTHSGCPLTHSSYASLNGVLYCKVHFNQLFLEK 165
Score = 45.6 bits (103), Expect = 2e-05
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 RCVKCNKII-TQGGVTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELF 498
+C C+K + +T + +H+ CF CTHC +L ++S D YC F +LF
Sbjct: 9 KCKACDKTVYVMDLLTLEGNTYHKSCFRCTHCKGTLVISNYSSMDGVLYCKPHFEQLF 66
>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
SP|P29675 Pollen specific protein SF3 {Helianthus
annuus}; contains Pfam profile PF00412: LIM domain
Length = 213
Score = 47.6 bits (108), Expect = 6e-06
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 RCVKCNKII-TQGGVTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELF 498
+C C+K + +T + P+H+ CF C+HCN +L ++S D YC F +LF
Sbjct: 10 KCKACDKTVYVMDLMTLEGMPYHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLF 67
Score = 43.6 bits (98), Expect = 9e-05
Identities = 37/161 (22%), Positives = 61/161 (37%), Gaps = 1/161 (0%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H++CF C+ C +LV + S +YC ++ F +G ++T
Sbjct: 31 YHKSCFRCSHCNGTLVICNYSSMDGVLYCKTHFEQLFKE----------SGNFSKNFQTA 80
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQ-GGVTYKNE 384
EK K P SF Q+ +C C K + +T + E
Sbjct: 81 GKTEKSNDAT--KAPNRLSSFFSGTQD-------------KCAACKKTVYPLEKMTMEGE 125
Query: 385 PWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
+H+ CF C H L + + D YC F +LF ++
Sbjct: 126 SYHKTCFRCAHSGCPLTHSSYAALDGVLYCKVHFSQLFLEK 166
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 331 CVKCNKIITQGG-VTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
C CN I G + N WH ECF C C+ ++ F++ P+ C+ E + +
Sbjct: 172 CAGCNMEIGHGRFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPK 231
Query: 508 CTSCT 522
C C+
Sbjct: 232 CDVCS 236
Score = 41.5 bits (93), Expect = 4e-04
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 3/93 (3%)
Frame = +1
Query: 148 CDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFAT 327
C GC G + + WH +CF C C PI F + CY +++
Sbjct: 172 CAGCNMEIGHG-RFLNCLNSLWHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHP 230
Query: 328 RCVKCNKIIT---QGGVTYKNEPWHRECFTCTH 417
+C C+ I G + Y+ P+ + + +H
Sbjct: 231 KCDVCSHFIPTNHAGLIEYRAHPFWVQKYCPSH 263
Score = 35.1 bits (77), Expect = 0.033
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAG-TKKMEYKT 204
WH CF C C + + +F + + + CY ++ +CD C +EY+
Sbjct: 192 WHPECFRCYGCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLIEYRA 251
Query: 205 RQWHEKCFC 231
+ + +C
Sbjct: 252 HPFWVQKYC 260
>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
Pfam profile PF00412: LIM domain
Length = 205
Score = 45.2 bits (102), Expect = 3e-05
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 328 RCVKCNKII-TQGGVTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELF 498
+C C+K + ++ + P+H+ CF CTHC +L ++S D YC F +LF
Sbjct: 9 KCNVCDKTVYVVDMLSIEGMPYHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF 66
Score = 41.9 bits (94), Expect = 3e-04
Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 1/161 (0%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H++CF C C+ +L + S +YC ++ F + F+ G + TR
Sbjct: 30 YHKSCFRCTHCKGTLQMSNYSSMDGVLYCKTHFEQLF-KESGNFSKNFQPGKTEKPELTR 88
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQ-GGVTYKNE 384
T S I I+C +DK C C K + + + E
Sbjct: 89 -----------------TPSKI---SSIFCGT--QDK----CAACEKTVYPLEKIQMEGE 122
Query: 385 PWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
+H+ CF C H +L + S D YC F +LF ++
Sbjct: 123 CFHKTCFRCAHGGCTLTHSSYASLDSVLYCRHHFNQLFMEK 163
>At5g66610.1 68418.m08396 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 529
Score = 44.4 bits (100), Expect = 5e-05
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = +1
Query: 142 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSF--IPREQEIYCAGCYED 315
S CDGC G + + WH +CFCC C PI + P +E YC +E
Sbjct: 199 SICDGCKSAIEYG-RSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP-FHEV 256
Query: 316 KFATRCVKCNKIITQGG--VTYKNEPWHRECFTCTHC 420
+C C ++ G V + W C C C
Sbjct: 257 DGTPKCCSCERLEPWGTKYVMLADNRW--LCVKCMEC 291
Score = 32.3 bits (70), Expect = 0.23
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = +1
Query: 331 CVKCNKIITQG-GVTYKNEPWHRECFTCTHCNTSLAGQRFTSRD--EKPYCAECFGEL-F 498
C C I G V WH ECF C +C+ +A + ++ YC F E+
Sbjct: 201 CDGCKSAIEYGRSVHALGVNWHPECFCCRYCDKPIAMHEYKEHPFWKEKYCP--FHEVDG 258
Query: 499 AKRCTSCTK 525
+C SC +
Sbjct: 259 TPKCCSCER 267
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
Frame = +1
Query: 25 HWHEACFLCAKCRVSLVDKQFGSK--LDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEY 198
+WH CF C C + ++ + YC ++ +C C + GTK +
Sbjct: 220 NWHPECFCCRYCDKPIAMHEYKEHPFWKEKYC-PFHEVDGTPKCCSCERLEPWGTKYVML 278
Query: 199 KTRQW-HEKCFCCVV 240
+W KC C V
Sbjct: 279 ADNRWLCVKCMECAV 293
>At4g36860.1 68417.m05226 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 351
Score = 43.6 bits (98), Expect = 9e-05
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +1
Query: 211 WHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKII---TQGGVTYKN 381
WH +CFCC C PI F Y CY+++ +C C+ I G + Y+
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRA 64
Query: 382 EPWHRECFTCTH 417
P+ + + +H
Sbjct: 65 HPFWMQKYCPSH 76
Score = 41.1 bits (92), Expect = 5e-04
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKM-EYKT 204
WH CF C C ++D +F ++ Y CY Q +CD C + EY+
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVCHNFIPTNPAGLIEYRA 64
Query: 205 RQWHEKCFC 231
+ + +C
Sbjct: 65 HPFWMQKYC 73
Score = 39.9 bits (89), Expect = 0.001
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +1
Query: 388 WHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKRCTSC 519
WH ECF C C+ + F+ +PY C+ E +C C
Sbjct: 5 WHPECFCCNACDKPIIDYEFSMSGNRPYHKLCYKEQHHPKCDVC 48
>At1g10200.1 68414.m01150 transcription factor LIM, putative strong
similarity to transcription factor Ntlim1 [Nicotiana
tabacum] GI:5689136, LIM domain protein WLIM-1
[Helianthus annuus] GI:5070280; contains Pfam profile
PF00412: LIM domain
Length = 190
Score = 42.3 bits (95), Expect = 2e-04
Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 1/150 (0%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H+ACF C C+ +L + S +YC +D F + G E GT K+ R
Sbjct: 30 YHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF--KRTGSLEKSFEGTPKIGKPDR 87
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQ-GGVTYKNE 384
+ + P GTK ++ G E +CV C+K + V+
Sbjct: 88 P--------LEGERPAGTK-----VSNMF-GGTRE-----KCVGCDKTVYPIEKVSVNGT 128
Query: 385 PWHRECFTCTHCNTSLAGQRFTSRDEKPYC 474
+H+ CF CTH +++ + + + K YC
Sbjct: 129 LYHKSCFKCTHGGCTISPSNYIAHEGKLYC 158
Score = 41.1 bits (92), Expect = 5e-04
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 328 RCVKCNKII-TQGGVTYKNEPWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAK 504
+C+ C+K + +T N +H+ CF C HC +L + S + YC F + F K
Sbjct: 9 KCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF-K 67
Query: 505 RCTSCTKPITG 537
R S K G
Sbjct: 68 RTGSLEKSFEG 78
Score = 30.3 bits (65), Expect = 0.93
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = +1
Query: 145 RCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF 321
+C C + K+ R +H+ CF C CK + ++ E +YC ++ F
Sbjct: 9 KCMACDKTVYL-VDKLTADNRVYHKACFRCHHCKGTLKLSNYNSFEGVLYCRPHFDQNF 66
>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 199
Score = 39.9 bits (89), Expect = 0.001
Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 1/161 (0%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H++CF C C+ L + S +YC ++ F + F++ K + T
Sbjct: 30 YHKSCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLF-KESGSFNKNFQSPAKSADKSTP 88
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQ-GGVTYKNE 384
+ + + P QE +C C+K + VT +++
Sbjct: 89 E---------LTRTPSRVAGRFSGTQE-------------KCATCSKTVYPIEKVTVESQ 126
Query: 385 PWHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
+H+ CF C+H ++ + + + YC F +LF ++
Sbjct: 127 TYHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEK 167
>At2g39900.1 68415.m04904 LIM domain-containing protein similar to
pollen specific LIM domain protein 1b [Nicotiana
tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
GI:4105772; contains Pfam profile PF00412: LIM domain
Length = 200
Score = 39.9 bits (89), Expect = 0.001
Identities = 36/160 (22%), Positives = 66/160 (41%)
Frame = +1
Query: 28 WHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR 207
+H+ACF C+ C+ L + S +YC ++ F + F++ K + K
Sbjct: 30 YHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLF-KESGSFSKNFQSPAKPLTDK-- 86
Query: 208 QWHEKCFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKFATRCVKCNKIITQGGVTYKNEP 387
P + P +G +DK AT C K I + VT +++
Sbjct: 87 --------------PTPELNRTPSRLAGMFSGT-QDKCAT-CTKTVYPIEK--VTVESQC 128
Query: 388 WHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGELFAKR 507
+H+ CF C+H ++ + + + YC F +LF ++
Sbjct: 129 YHKSCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEK 168
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +1
Query: 388 WHRECFTCTHCNTSLAGQRFTSRDEKPYCAECFGEL------FAKRCTSCTKPIT 534
+H+ CF C+HC + L ++S + YC F +L F+K S KP+T
Sbjct: 30 YHKACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPLT 84
>At5g66620.1 68418.m08397 LIM domain-containing protein contains
Pfam profile PF00412: LIM domain
Length = 644
Score = 35.9 bits (79), Expect = 0.019
Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Frame = +1
Query: 142 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 312
S C GC G + WH CFCC C PI ++ + + + CYE
Sbjct: 284 SLCGGCNFAVEHGGS-VNILGVLWHPGCFCCRACHKPIAIHDIENHVSNSRGKFHKSCYE 342
Query: 313 DKFATRCVKCNKIITQGGVTYKNEPWHRECFTCTH 417
C C + + TY N P+ E + H
Sbjct: 343 ----RYCYVCKE---KKMKTYNNHPFWEERYCPVH 370
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +1
Query: 331 CVKCNKIITQGG-VTYKNEPWHRECFTCTHCNTSLA 435
C CN + GG V WH CF C C+ +A
Sbjct: 286 CGGCNFAVEHGGSVNILGVLWHPGCFCCRACHKPIA 321
>At5g66630.1 68418.m08398 LIM domain-containing protein contains low
similarity to Pfam profile PF00412: LIM domain
Length = 702
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +1
Query: 142 SRCDGCGEVFRAGTKKMEYKTRQWHEKCFCCVVCKNPIG---TKSFIPREQEIYCAGCYE 312
S C GC + + + WH CFCC C PI ++ + + + CYE
Sbjct: 345 SMCGGCNSAVKH-EESVNILGVLWHPGCFCCRSCDKPIAIHELENHVSNSRGKFHKSCYE 403
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 31.9 bits (69), Expect = 0.30
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Frame = +1
Query: 106 IYCGNCYDAQFASRCDGCGEVFRAGTKKME-YKTRQWHEKCFCCVVC-KNPIGTKSFIPR 279
++C C+ CDGC F A +E W + CC C + + T S +
Sbjct: 695 VFCSVCHYGGKLILCDGCPSAFHANCLGLEDVPDGDWFCQSCCCGACGQFFLKTTSTNAK 754
Query: 280 EQE-IYCAGCYEDKFATRCVK 339
E++ I C C E K+ C++
Sbjct: 755 EEKFISCKQC-ELKYHPSCLR 774
>At1g32530.1 68414.m04014 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger); weak similarity to
interaptin (GI:3549261) [Dictyostelium discoideum] weak
similarity to Axoneme-associated protein mst101(2)
(Swiss-Prot:Q08696) [Drosophila hydei]
Length = 711
Score = 31.9 bits (69), Expect = 0.30
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 7 GSYKDK-HWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNCYDAQFASRCDG 156
GSY ++ ++ C +C K VS+V F ++ CG+C D+ FAS G
Sbjct: 641 GSYDNEANYDRECIICMKDEVSVV---FLPCAHQVVCGSCSDSFFASNNGG 688
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = +1
Query: 112 CGNCYDAQFASRCDGCGEVFRAGTKKMEYKTR-QWHEKCFCCVVCKNPIGTKSFIPREQE 288
CG C D CD C F M+ W+ C +C + + R Q+
Sbjct: 729 CGVCGDGGELICCDNCPSTFHQACLSMQVLPEGSWYCSSCTCWICSELVSDNA--ERSQD 786
Query: 289 IYCAGCYEDKFATRCVK 339
C+ C K+ C++
Sbjct: 787 FKCSQC-AHKYHGTCLQ 802
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +1
Query: 400 CFTCTHCNTSLAGQRFTSRDEKPYCAECFGE--LFAKRCTSCTKPITG 537
C C ++ ++E +C+ C E +F+K C SC K + G
Sbjct: 122 CLVIQDCRRDTQQEQSNEQEEALFCSLCNAEVRMFSKHCRSCGKCVDG 169
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = +1
Query: 223 CFCCVVCKNPIGTKSFIPREQEIYCAGCYEDKF----ATRCVKCN 345
C C +C NP + I +C C +KF C CN
Sbjct: 13 CLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCN 57
>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 278
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +1
Query: 4 RGSYKDKHWHEACFLCAKCRVSLVDKQFGSKLDKIYCGNC--YDAQFASRCDGC 159
R SY D +H+ CF C K + +V + + + C C + DGC
Sbjct: 31 RESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCKTENLSIIHNYDGC 84
>At1g50200.1 68414.m05629 aminoacyl-tRNA synthetase family protein
contains Pfam profiles: PF01411 tRNA synthetases class
II (A), PF02272 DHHA1 domain
Length = 1003
Score = 28.3 bits (60), Expect = 3.7
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 363 RCDVQERAVAPRVLHLHPLQH-LARRTAVHVEGREAVLCRVLRRAIRQTLHLL 518
R D+ R VA H+ L +A + EGRE VL R+LRRA+R +L
Sbjct: 343 RVDMAYRVVAD---HIRTLSFAIADGSRPGNEGREYVLRRILRRAVRYGKEIL 392
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 27.9 bits (59), Expect = 5.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = +1
Query: 55 KCRVSLVDKQFGSKLDKIYCGNCYDAQ--FASRCDGCGEVFRAGTKKMEYKTRQWHEKCF 228
KC + L+ ++ +D+ GN + FA D E FRA TKK+ T + +
Sbjct: 101 KCVMDLMLEKVELAIDQAVSGNMNGVRIIFAGDLDSLNEHFRAATKKLMELTEE--NRDL 158
Query: 229 CCVVC 243
VVC
Sbjct: 159 IVVVC 163
>At2g17975.1 68415.m02088 zinc finger (Ran-binding) family protein
contains Pfam domain, PF00641: Zn-finger in Ran binding
protein and others
Length = 268
Score = 27.9 bits (59), Expect = 5.0
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +1
Query: 178 GTKKMEYKTRQWHEKCFC--CVVCKNPIGTKSFIPREQEIYCAGCYEDKFATR--CVKCN 345
G + Y R + +C ++ N ++PR + C GC + +A+R C KC
Sbjct: 13 GCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWLPRIGDWICTGCTNNNYASREKCKKCG 72
Query: 346 K 348
+
Sbjct: 73 Q 73
>At1g36050.1 68414.m04479 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 100 DKIYCGNCYDAQFASR--CDGCGEVFRAGTKK 189
++ YCG+CY A+ C+ C +V A KK
Sbjct: 142 NETYCGSCYGAEAEEHDCCNSCEDVREAYRKK 173
>At1g22200.1 68414.m02776 expressed protein
Length = 386
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Frame = +1
Query: 79 KQFGSKLD--KIYCGNCYDAQFA--SRCDGCGEVFRAGTKK 189
++ G +L+ + YCG+C+ A+ + + C+ C EV A KK
Sbjct: 133 QKHGGRLEHNETYCGSCFGAEASDDACCNSCEEVREAYRKK 173
>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
AMP-binding protein GB:CAA96521 from [Brassica napus]
(Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
AMP-binding enzyme domain PF00501; identical to cDNA
acyl-CoA synthetase-like protein GI:20799732
Length = 722
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = -2
Query: 214 ATASSCTPSSWFQHGTPPHIHRIGWRTEHHSSCRSRSC 101
AT WF G +GW T HS+ RSRSC
Sbjct: 547 ATKQVIDDDGWFNTGD------MGWITPQHSTGRSRSC 578
>At1g10230.1 68414.m01153 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At18), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 [Arabidopsis thaliana]
Length = 183
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 201 DEAVAREMFLLRRMQEPDRYEELYPAR--TGDLLRRVL 308
DEAVAR+ ++ M E + E P TGD+L +++
Sbjct: 44 DEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKII 81
>At3g45830.1 68416.m04960 expressed protein
Length = 1298
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +3
Query: 42 LPLRQVPRLLGG*AVWLQTGQDLLRQL 122
LP + + +L+ A WL+TGQ+ L+Q+
Sbjct: 970 LPHKMLVKLVDSFANWLKTGQETLQQI 996
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,861
Number of Sequences: 28952
Number of extensions: 272798
Number of successful extensions: 934
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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