Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J19
(434 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.033
SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05) 35 0.033
SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15) 31 0.41
SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15) 30 0.72
SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9) 30 0.95
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.9
SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05) 28 3.8
SB_28078| Best HMM Match : SGS (HMM E-Value=1.5) 28 3.8
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38) 28 3.8
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.8
SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22) 27 5.0
SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39) 27 6.7
SB_8959| Best HMM Match : PAN (HMM E-Value=0.013) 27 6.7
SB_38850| Best HMM Match : ResIII (HMM E-Value=0.045) 27 8.8
SB_37320| Best HMM Match : GP46 (HMM E-Value=5) 27 8.8
SB_28194| Best HMM Match : ResIII (HMM E-Value=0.72) 27 8.8
SB_23107| Best HMM Match : ResIII (HMM E-Value=0.045) 27 8.8
SB_15828| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1) 27 8.8
SB_35990| Best HMM Match : ResIII (HMM E-Value=2) 27 8.8
SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6) 27 8.8
SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6) 27 8.8
SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6) 27 8.8
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4) 27 8.8
SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_33983| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 34.7 bits (76), Expect = 0.033
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 384 DWLRVVASAHDSYELRY 434
DWLRVVA+ H SYELRY
Sbjct: 18 DWLRVVAADHTSYELRY 34
>SB_2161| Best HMM Match : Ribosomal_L22e (HMM E-Value=1.1e-05)
Length = 50
Score = 34.7 bits (76), Expect = 0.033
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = +3
Query: 384 DWLRVVASAHDSYELRY 434
DWLRVVA+ H SYELRY
Sbjct: 18 DWLRVVAADHTSYELRY 34
>SB_2130| Best HMM Match : fn2 (HMM E-Value=2.7e-15)
Length = 430
Score = 31.1 bits (67), Expect = 0.41
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 226 KNVLKLKAKQITWAITLSSPGTRQKSLSTQTFPSQRG-ISNT*PSVT 363
K V K +Q+ AI + T+QK++ T+TFP R I NT +T
Sbjct: 146 KPVKKTNVEQVLRAIAKPASNTQQKNVVTETFPQLRDIIGNTMIKIT 192
>SB_44986| Best HMM Match : Ion_trans_2 (HMM E-Value=6.9e-15)
Length = 711
Score = 30.3 bits (65), Expect = 0.72
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 162 IDCTHPAEDSILDVGNFEKYLKERV--KVEGKTNNLGNHVV 278
+ C H +E S L + + Y ++ KVE NNL NHV+
Sbjct: 376 LPCVHSSETSELFAQDLKMYYVQKAFSKVEPMLNNLSNHVI 416
>SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9)
Length = 235
Score = 29.9 bits (64), Expect = 0.95
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 17 HVFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
HV CC D G KE P ++W + + RW S RCQ ED
Sbjct: 107 HVVCCGDYGQVPPWGDKEGPHDMLKEWAQGNIRWFESDYRCQCED 151
>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2484
Score = 28.7 bits (61), Expect = 2.2
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYSFLTSLL 81
++ CA+ G LP+ A+NF+ FY++ + L
Sbjct: 1999 VVGSACAICGVLVIALPVSVVASNFSIFYTYAKARL 2034
>SB_8470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3133
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P ++W +R+ RW S RC ED
Sbjct: 2969 VVCCGDYGQVPPLGDKEEPHDMLKEWAQRNIRWFESDYRCLCED 3012
>SB_55881| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 874
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KERP ++W + + RW S RC ED
Sbjct: 550 VVCCGDYGQVPPWGDKERPHDMLKEWAQGNIRWFESDYRCLSED 593
>SB_44112| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1433
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P + W +R+ RW S RCQ ED
Sbjct: 1128 VVCCGDYGQVPPWGDKEGPHDMLKAWAQRNIRWFESDYRCQCED 1171
>SB_28078| Best HMM Match : SGS (HMM E-Value=1.5)
Length = 934
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 197 QDAILSRVCAVNGKFKANLPLGTFAANFATFYS 99
Q I+ +CAV G LP+ +NF+ +YS
Sbjct: 7 QGQIVGSLCAVCGVLMIALPVPVIVSNFSLYYS 39
>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 3.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -1
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYSF 96
++ VCA++G LP+ A+NF+ + S+
Sbjct: 386 LVGSVCAISGVLMIALPVSVVASNFSLYNSY 416
>SB_34697| Best HMM Match : Ion_trans (HMM E-Value=7.9e-38)
Length = 1851
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFY 102
+LS CA+ G LP+ TF +NF Y
Sbjct: 1790 LLSAACAIFGAITLALPVLTFVSNFNKLY 1818
>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 290 QDKSRYQRRHSLLKEVSQIPDQALPQEKQSSGLAP 394
Q++ + QRR L ++ Q P Q LPQ Q P
Sbjct: 802 QERQQLQRRQLLQQQQQQKPKQLLPQRVQQQQYLP 836
>SB_3220| Best HMM Match : Ion_trans (HMM E-Value=5.6e-22)
Length = 256
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFYS 99
I+ +CA++G LP+ +NF FY+
Sbjct: 167 IVGALCAISGVLTIALPVPVIVSNFENFYN 196
>SB_43676| Best HMM Match : Ion_trans (HMM E-Value=1.2e-39)
Length = 605
Score = 27.1 bits (57), Expect = 6.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 188 ILSRVCAVNGKFKANLPLGTFAANFATFY 102
I+ +CA+ G LP+ NF+T+Y
Sbjct: 392 IIGSLCAICGVLIIGLPVSVIGNNFSTYY 420
>SB_8959| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 450
Score = 27.1 bits (57), Expect = 6.7
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -1
Query: 161 GKFKANLPLGTFAANFATFYSFLTSLLV*LAFLCDGLLCNCHLGN 27
G F+ ++ G NF+ FY FL + L G+L N H+ N
Sbjct: 294 GTFRVDVVDGPATNNFSVFYQFLMVATM-LNVALPGILLNIHILN 337
>SB_38850| Best HMM Match : ResIII (HMM E-Value=0.045)
Length = 382
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P E+W + + RW S RC ED
Sbjct: 311 VVCCGDYGQVSPWGNKEGPHDMLEEWAQGNIRWFESDYRCLCED 354
>SB_37320| Best HMM Match : GP46 (HMM E-Value=5)
Length = 555
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P E+W + + RW S RC ED
Sbjct: 508 VVCCGDYGQVPPWEDKEGPHDMLEEWAQGNIRWFESDYRCPCED 551
>SB_28194| Best HMM Match : ResIII (HMM E-Value=0.72)
Length = 309
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P E+W + + RW S RC ED
Sbjct: 255 VVCCGDYGQVPPWEDKEGPHDMLEEWAQGNIRWFESDYRCPCED 298
>SB_23107| Best HMM Match : ResIII (HMM E-Value=0.045)
Length = 418
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P E+W + + RW S RC ED
Sbjct: 347 VVCCGDYGQVSPWGNKEGPHDMLEEWAQGNIRWFESDYRCLCED 390
>SB_15828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 173 CAVNGKFKANLPLGTFAANFATFYS 99
CA++G LP+ +NFA +YS
Sbjct: 369 CAISGVLAIALPVPVIVSNFAYYYS 393
>SB_3900| Best HMM Match : DUF1070 (HMM E-Value=1)
Length = 500
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P E+W + + RW S RC ED
Sbjct: 316 VVCCGDYGQVSPWGNKEGPHDMLEEWAQGNIRWFESDYRCLCED 359
>SB_35990| Best HMM Match : ResIII (HMM E-Value=2)
Length = 798
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KERP ++W + + RW S RC ED
Sbjct: 734 VVCCGDYGQVPPWGDKERPHDMLKEWAQGNIRWFESDYRCLCED 777
>SB_31943| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 1053
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G R KE P ++W + + RW S RC ED
Sbjct: 562 VVCCGDYGQVPPWRDKEGPHDMLKEWAQGNIRWFESDYRCLCED 605
>SB_29335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G R KE P ++W + + RW S RC ED
Sbjct: 500 VVCCGDYGQVPPWRDKEGPHDMLKEWAQGNIRWFESDYRCLCED 543
>SB_19979| Best HMM Match : Mo-co_dimer (HMM E-Value=6)
Length = 551
Score = 26.6 bits (56), Expect = 8.8
Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P EDW + + RW S RC ED
Sbjct: 476 VVCCGDYGQVLPWGDKEGPHDMLEDWIQGNIRWFESDYRCLCED 519
>SB_14622| Best HMM Match : DUF1441 (HMM E-Value=1.6)
Length = 426
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -2
Query: 274 T*LPRLFVLPSTLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIF-LLAPLPRILPPFTP 98
T +PRL LT + F++ R+ G +M ++ +F ++ + +++ PFTP
Sbjct: 95 TVVPRLVKFIEYLTNWYVRFNR---KRLKGDQGQEDAMQAIQTLFGVVLTITKLMAPFTP 151
Query: 97 FL 92
FL
Sbjct: 152 FL 153
>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
Length = 906
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G KE P ++W +R+ RW S RC ED
Sbjct: 679 VVCCGDYGQVPPWGDKEGPHDMLKEWAQRNIRWFESDYRCLCED 722
>SB_3287| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1030
Score = 26.6 bits (56), Expect = 8.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 20 VFCCQD-GSYKEARRKERPVTP-EDW*ERSKRWQNSRQRCQEED 145
V CC D G R KE P ++W + + RW S RC ED
Sbjct: 780 VVCCGDYGQVPPWRDKEGPHDMLKEWAQGNIRWFESDYRCLCED 823
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,504,783
Number of Sequences: 59808
Number of extensions: 263252
Number of successful extensions: 932
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 834771332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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