Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J19
(434 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B) id... 85 3e-17
At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B) id... 85 3e-17
At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C) ribo... 84 4e-17
At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) simi... 81 4e-16
At2g01710.1 68415.m00099 DNAJ heat shock N-terminal domain-conta... 31 0.44
At2g36885.2 68415.m04523 expressed protein 29 1.8
At2g36885.1 68415.m04522 expressed protein 29 1.8
At1g70505.1 68414.m08114 expressed protein 27 5.5
At1g59885.1 68414.m06746 hypothetical protein 27 5.5
At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low... 26 9.5
At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low... 26 9.5
At2g40050.1 68415.m04921 DC1 domain-containing protein contains ... 26 9.5
>At3g05560.2 68416.m00614 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 84.6 bits (200), Expect = 3e-17
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 150 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 329
+ FTIDC+ P +D I+++ + EK+L+ER+KV GK LG+ V I R+K+K+ + AD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 330 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRY 434
DWLRV+A+ D YELRY
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRY 112
>At3g05560.1 68416.m00613 60S ribosomal protein L22-2 (RPL22B)
identical to 60S ribosomal protein L22-2 SP:Q9M9W1 from
[Arabidopsis thaliana]
Length = 124
Score = 84.6 bits (200), Expect = 3e-17
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 150 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 329
+ FTIDC+ P +D I+++ + EK+L+ER+KV GK LG+ V I R+K+K+ + AD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITVTADGQFS 75
Query: 330 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRY 434
DWLRV+A+ D YELRY
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRY 112
>At5g27770.1 68418.m03330 60S ribosomal protein L22 (RPL22C)
ribosomal protein L22 (cytosolic), Rattus norvegicus,
PIR:S52084
Length = 124
Score = 83.8 bits (198), Expect = 4e-17
Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Frame = +3
Query: 150 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 329
+ FTIDC+ P +D I+++ + EK+L+ER+KV GK LG+ V I R+K+K+ + AD FS
Sbjct: 16 VSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFS 75
Query: 330 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRY 434
DWLRV+A+ D YELRY
Sbjct: 76 KRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRY 112
>At1g02830.1 68414.m00243 60S ribosomal protein L22 (RPL22A) similar
to ribosomal protein L22 GI:710294 from [Rattus
norvegicus]
Length = 127
Score = 80.6 bits (190), Expect = 4e-16
Identities = 40/97 (41%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +3
Query: 150 LKFTIDCTHPAEDSILDVGNFEKYLKERVKVEGKTNNLGNHVVIARDKTKVAINADIPFS 329
+ F IDC+ P +D+IL++ EK+L+ER+KV GK LGN V I R K+ +NA+ FS
Sbjct: 18 VSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKINVNANSNFS 77
Query: 330 XXXXXXXXXXXXXXXXXXDWLRVVASAHDS--YELRY 434
DWLRV+AS D YE+RY
Sbjct: 78 KRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRY 114
>At2g01710.1 68415.m00099 DNAJ heat shock N-terminal
domain-containing protein simlar to AHM1 [Triticum
aestivum] GI:6691467; contains Pfam profile PF00226:
DnaJ domain
Length = 311
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 175 CVQSMVNLRLIFLLAPLPRILPPFTPFLPVFWCNWPFFATGF 50
C++ N + F A +P+ LPP P ++C W FF GF
Sbjct: 187 CIRCQ-NCQRAFHAASIPQ-LPPLIPGKDEYYCCWGFFPMGF 226
>At2g36885.2 68415.m04523 expressed protein
Length = 227
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 244 STLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPRILPPFTP 98
S L+ S LP+SR+L+S C+ N+ L+ R P TP
Sbjct: 8 SALSNHISPASSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTP 56
>At2g36885.1 68415.m04522 expressed protein
Length = 256
Score = 28.7 bits (61), Expect = 1.8
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 244 STLTRSFKYFSKLPTSRMLSSAGCVQSMVNLRLIFLLAPLPRILPPFTP 98
S L+ S LP+SR+L+S C+ N+ L+ R P TP
Sbjct: 8 SALSNHISPASSLPSSRLLNSTQCLSRFSNVSSFPALSTFRRRKIPLTP 56
>At1g70505.1 68414.m08114 expressed protein
Length = 338
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = -2
Query: 94 LPVFWCNWPFFATGFFVTAIL 32
+P +W NW FF FV L
Sbjct: 33 IPSYWLNWRFFVCAIFVLTSL 53
>At1g59885.1 68414.m06746 hypothetical protein
Length = 129
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 316 SALIATFVLSRAMTT*LPRLFVLPSTLTRSFKYFSKL 206
SAL+AT LS A+ T F L +T+T + Y+ +L
Sbjct: 68 SALLATKSLSLALLTTKAESFALLTTITNKYGYWVEL 104
>At5g44740.2 68418.m05484 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 672
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 250 LPSTLTRSFKYFSKLPTSRMLSSAGCVQSMV 158
+PS + +YF PT S+ GCVQ V
Sbjct: 439 IPSGTSSIMRYFQSQPTVPSRSADGCVQGNV 469
>At5g44740.1 68418.m05483 UMUC-like DNA repair family protein low
similarity to DNA polymerase eta [Homo sapiens]
GI:11463971; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 588
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 250 LPSTLTRSFKYFSKLPTSRMLSSAGCVQSMV 158
+PS + +YF PT S+ GCVQ V
Sbjct: 355 IPSGTSSIMRYFQSQPTVPSRSADGCVQGNV 385
>At2g40050.1 68415.m04921 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 609
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 404 SHHSEPVPKIVFLEVTLGQVFEIPL*EGN--VCVDSDFCL 291
+HH V+ E L Q IP+ EGN VC++ DF L
Sbjct: 337 NHHLRLEVSNVYDENMLCQACAIPIYEGNLYVCMECDFIL 376
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,280,348
Number of Sequences: 28952
Number of extensions: 176361
Number of successful extensions: 531
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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