Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J18
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198...    30   0.86 
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400...    29   1.1  
03_06_0561 + 34728428-34728439,34728529-34728615,34728729-347287...    27   4.6  

>01_03_0075 -
           12218501-12218611,12219028-12219267,12219698-12219815,
           12219949-12220016,12220124-12220375,12221362-12221463,
           12221734-12221802,12221892-12221987,12222161-12222208,
           12222352-12222479,12222818-12222896,12223651-12223797,
           12223956-12224022,12224655-12224830,12225588-12225755,
           12225879-12225992,12226657-12226722,12227306-12227524,
           12228142-12228321,12228481-12228584,12228998-12229277,
           12230582-12231004
          Length = 1084

 Score = 29.9 bits (64), Expect = 0.86
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 298 EFVFVPFPTMIFGPRTHDAILIFNKWYKLKSFPDI 194
           EF     P + FG R  D +++F K  KLK FP +
Sbjct: 395 EFTGRVMPMLPFG-RAEDGVMVFTKQLKLKKFPKL 428


>07_03_0935 -
           22738221-22738328,22739207-22739237,22739901-22740095,
           22740693-22740782,22740900-22741037,22741959-22742108,
           22743589-22744766
          Length = 629

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 271 MIFGPRTHDAILIFNKWYKLKSFPDILCEVERL 173
           ++ G  THD + ++N+W K K +P    E+ RL
Sbjct: 406 LLEGTLTHDFVSVWNEWRKTKYYPLHYSELVRL 438


>03_06_0561 +
           34728428-34728439,34728529-34728615,34728729-34728750,
           34728843-34728925,34729139-34729171,34729468-34729546,
           34729642-34729694,34729931-34729991,34730168-34730250,
           34730418-34730513
          Length = 202

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 272 RRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPV*RELLRLREYKVDL 415
           RRK+DK+E+                       PV R+ L+ R+Y+VDL
Sbjct: 13  RRKFDKEEYLERARQREREEKEEARKGKEKGPPVQRQPLKHRDYEVDL 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,896,718
Number of Sequences: 37544
Number of extensions: 95246
Number of successful extensions: 142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)