Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J18
         (416 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.22 
SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.7  

>SB_41186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 251 STRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXP-V*RELLRLREYKVDL 415
           S + ++ RR WDK+E+                       P V RELL+ R+Y+VDL
Sbjct: 5   SGKSDNFRRTWDKEEYEKKAKDRLKEEEEGESSIEKRNGPPVKRELLKKRDYEVDL 60


>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +3

Query: 192 SISGKLFSLYHLLKINIAS*VRGPKIIVGNGTKTNSK 302
           S +G+LF   H LK+N  +  R P I   NGTK + +
Sbjct: 270 SPTGELFPNLHTLKLNKTAIGRLPNITKLNGTKVDEE 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,470,894
Number of Sequences: 59808
Number of extensions: 121527
Number of successful extensions: 182
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)