Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J18
         (416 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin typ...    38   0.010
AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens ...    38   0.010

>BC056668-1|AAH56668.1|  199|Homo sapiens zinc finger, matrin type 2
           protein.
          Length = 199

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 23/54 (42%), Positives = 26/54 (48%)
 Frame = +2

Query: 254 TRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPV*RELLRLREYKVDL 415
           T+  D RRKWDKDE+                       PV RELLR R+YKVDL
Sbjct: 7   TKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDL 58


>AK055683-1|BAB70983.1|  199|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31121 fis, clone IMR322000742, weakly similar to
           HYPOTHETICAL ZINC FINGER PROTEIN ZK686.4 IN CHROMOSOME
           III. ).
          Length = 199

 Score = 38.3 bits (85), Expect = 0.010
 Identities = 23/54 (42%), Positives = 26/54 (48%)
 Frame = +2

Query: 254 TRPEDHRRKWDKDEFXXXXXXXXXXXXXXXXXXXXXXXPV*RELLRLREYKVDL 415
           T+  D RRKWDKDE+                       PV RELLR R+YKVDL
Sbjct: 7   TKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ--PVKRELLRHRDYKVDL 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,100,787
Number of Sequences: 237096
Number of extensions: 571593
Number of successful extensions: 711
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3144905170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)