Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J18
         (416 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65670.1 68414.m07452 cytochrome P450 family protein similar ...    31   0.41 
At4g15393.1 68417.m02352 cytochrome P450 family protein similar ...    26   8.9  

>At1g65670.1 68414.m07452 cytochrome P450 family protein similar to
           Cytochrome P450 90A1 (SP:Q42569) [Arabidopsis thaliana]
          Length = 482

 Score = 30.7 bits (66), Expect = 0.41
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 295 FVFVPFPTMIFGPRTHDAILIFNKW 221
           ++F+ +P   F P+T+D  L+FN W
Sbjct: 368 WIFMGYPNNHFNPKTYDDPLVFNPW 392


>At4g15393.1 68417.m02352 cytochrome P450 family protein similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; contains Pfam PF00067:
           Cytochrome P450
          Length = 399

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 295 FVFVPFPTMIFGPRTHDAILIFNKW 221
           ++F+ +P + F P  +D  L FN W
Sbjct: 371 WIFMGYPYVHFNPEKYDDPLAFNPW 395


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,864,937
Number of Sequences: 28952
Number of extensions: 82670
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 635399168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)