Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J17
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 3.8
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 26 3.8
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 3.8
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 3.8
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 3.8
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 5.1
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 6.7
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 6.7
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 8.9
SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family ... 25 8.9
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 8.9
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 191 FHPIFVVYLASRLFIVRTVKEFLM 120
F+ +FV+Y A I RTV ++LM
Sbjct: 178 FYRLFVIYCALGFGITRTVPKYLM 201
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -1
Query: 280 RRPYNINXXXXLVNYLRIFHCLREFVLKNSFIRYSW 173
++P + +V YLR+ L E LK F+ +SW
Sbjct: 204 QKPLKLYSLIKVVTYLRVTAKLSEAQLKYVFLYFSW 239
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 191 FHPIFVVYLASRLFIVRTVKEFLM 120
F+ +FV+Y A I RTV ++LM
Sbjct: 178 FYRLFVIYCALGFGITRTVPKYLM 201
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 191 FHPIFVVYLASRLFIVRTVKEFLM 120
F+ +FV+Y A I RTV ++LM
Sbjct: 150 FYRLFVIYCALGFGITRTVPKYLM 173
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -3
Query: 191 FHPIFVVYLASRLFIVRTVKEFLM 120
F+ +FV+Y A I RTV ++LM
Sbjct: 178 FYRLFVIYCALGFGITRTVPKYLM 201
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +1
Query: 232 ANSLLIIVINLCYKAFY--LYVYSYFYV 309
+N ++I +N CY +FY Y +FY+
Sbjct: 135 SNRYVVICMNGCYSSFYQTWYTLLFFYI 162
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +3
Query: 333 LNNFCSESKNILTVFLFSSWFKHYFQTCN*KKLTACLSALN---SMGLD 470
L+ + LT F+ S KH + TCN +++ LS L+ S GLD
Sbjct: 413 LSGLLDRAMQFLTSFI-SVCKKHLYPTCNYQQVLVSLSFLDTLISFGLD 460
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -2
Query: 240 TICEFFIASENSFLKTLSSDIRGLSRFQALHCAYRQGIPNELRVDESEHFWYF 82
+I E+ EN++L+ + + SRF+ Y + + N+ D + +F
Sbjct: 146 SIKEYAKKQENAYLEAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFF 198
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 24.6 bits (51), Expect = 8.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 194 LFHPIFVVYLASRLFIVRTVKE 129
L P+F +YL +R + VRT +E
Sbjct: 1049 LIVPLFFLYLYNRAYYVRTSRE 1070
>SPAC4F10.10c |||mannosyltransferase complex subunit, Anp family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 24.6 bits (51), Expect = 8.9
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = +1
Query: 43 FVFYTFSPKINSN 81
F++Y F+P +NSN
Sbjct: 22 FIYYLFTPSVNSN 34
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 240 TICEFFIASENSFLKTLSSDIR 175
+IC+F +ASE + T SD++
Sbjct: 621 SICDFVVASEKIAVSTRRSDVK 642
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,045,985
Number of Sequences: 5004
Number of extensions: 39997
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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