Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J17
         (517 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    27   6.8  
02_04_0561 + 23879976-23879981,23880531-23882558,23882687-238827...    27   6.8  
02_04_0559 + 23869791-23869907,23869993-23872131,23872235-238723...    27   6.8  

>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = -2

Query: 237 ICEFFIASENSFLKTLSSDIRGLSRFQALHCAYRQGIPNELRVDESEH 94
           +CE       SFL+ +SS+     +++ L+  + +  P   R D   H
Sbjct: 826 VCEIMFGELTSFLEDVSSETEAKPKWKPLYTIFHKKNPRSRREDLRTH 873


>02_04_0561 +
           23879976-23879981,23880531-23882558,23882687-23882722,
           23882826-23882939,23883158-23883226,23883311-23883445
          Length = 795

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = -2

Query: 201 LKTLSSDIRGLSRFQALHCAYRQGIPNELRVDESEHFWYFITIY 70
           ++  +  + GLS + A+  A+++ + + L +DE E  W  +  Y
Sbjct: 326 MRKATERLGGLSEYAAISKAFQKAVYDSLTIDEFEGNWNALITY 369


>02_04_0559 +
           23869791-23869907,23869993-23872131,23872235-23872336,
           23872720-23872773,23872804-23872899
          Length = 835

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 182 SDERVFKNEFSEAMKNSQ 235
           +DE +F  EFSE +KNSQ
Sbjct: 706 NDEGIFSPEFSEGVKNSQ 723


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,491,810
Number of Sequences: 37544
Number of extensions: 192798
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)