Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J17
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)                       30   1.3  
SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_20141| Best HMM Match : BTK (HMM E-Value=6.2)
          Length = 254

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
 Frame = -1

Query: 394 NHEENKNTVKIFLLSLQKLFSTHAK---FQNPHKNRNKHTNR--RPYNINXXXXLVNYLR 230
           N + +K+ VKIFLL+L+ L ST  K    +NP +N    ++R  R    +     +    
Sbjct: 122 NTKFSKDAVKIFLLNLELLCSTDMKKSGDKNPEENEAFTSSRIHRKTEFDTLLHSIGDFS 181

Query: 229 IFHCLREFVLKNSFIRYSWFISLP 158
            F  ++  +L  + I  +W+  +P
Sbjct: 182 KFQYVQWVLLFVAVIPQAWYTYMP 205


>SB_33109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = +1

Query: 268 YKAFYLYVYSYFYVDFETLHEY*TTFVVRVKIF*QCFYFLRGSNIIFKHATKKN*RPVCL 447
           Y  +Y Y Y Y+Y   E   E  +  V  ++     F++ R  +I  KHA +   +   +
Sbjct: 14  YYYYYYYYYYYYYAILEFRGEVRSLLVYTIRTSCNKFFYDRAESI--KHAERSRRKRGYV 71

Query: 448 HLTQ 459
           H T+
Sbjct: 72  HPTK 75


>SB_23493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1230

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 336 NNFCSESKNILTVFLFSSWFKHYFQT--CN*KKLTACL 443
           N F +E    + V ++ S   HY QT  CN  K++ CL
Sbjct: 246 NEFVAELMKYIDVHVYGSCSSHYNQTRVCNRGKMSKCL 283


>SB_6544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 400

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 132 LDGTHNEEPGSEINHEYR 185
           LD TH+E P S + HE+R
Sbjct: 234 LDNTHDEPPESLLRHEFR 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,087
Number of Sequences: 59808
Number of extensions: 259844
Number of successful extensions: 656
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)