Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J17
         (517 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPas...    28   4.6  
AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane cal...    28   4.6  
AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane cal...    28   4.6  
AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane cal...    28   4.6  
U11029-2|AAA19242.2|  432|Caenorhabditis elegans Cam kinase kina...    27   6.0  
U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kina...    27   6.0  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    27   6.0  
AB016838-1|BAA77824.4|  432|Caenorhabditis elegans Ca2+/calmodul...    27   6.0  

>AJ010646-1|CAA09303.1| 1237|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1237

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 359  KYFNSVFIFFVVQTLFSNMQLKKIDG 436
            K+F  VF  FV+ TLF+ +  +KI G
Sbjct: 938  KHFTIVFNTFVMMTLFNEINARKIHG 963


>AC025724-13|AAK68551.1| 1234|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform b protein.
          Length = 1234

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 359  KYFNSVFIFFVVQTLFSNMQLKKIDG 436
            K+F  VF  FV+ TLF+ +  +KI G
Sbjct: 938  KHFTIVFNTFVMMTLFNEINARKIHG 963


>AC025724-12|AAK68550.1| 1160|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform a protein.
          Length = 1160

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 359  KYFNSVFIFFVVQTLFSNMQLKKIDG 436
            K+F  VF  FV+ TLF+ +  +KI G
Sbjct: 938  KHFTIVFNTFVMMTLFNEINARKIHG 963


>AC025724-11|AAM97979.1| 1137|Caenorhabditis elegans Membrane calcium
            atpase protein3, isoform c protein.
          Length = 1137

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 359  KYFNSVFIFFVVQTLFSNMQLKKIDG 436
            K+F  VF  FV+ TLF+ +  +KI G
Sbjct: 938  KHFTIVFNTFVMMTLFNEINARKIHG 963


>U11029-2|AAA19242.2|  432|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoforma protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 391 HEENKNTVKIFLLSLQKLFSTHAKFQNPHKNRNK 290
           +EE+KN   + +L   KL    A F+ P   RNK
Sbjct: 40  NEEDKNLYALKVLDKMKLLKNFACFRQPPPRRNK 73


>U11029-1|AAZ82849.1|  512|Caenorhabditis elegans Cam kinase kinase
           protein 1, isoformb protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 391 HEENKNTVKIFLLSLQKLFSTHAKFQNPHKNRNK 290
           +EE+KN   + +L   KL    A F+ P   RNK
Sbjct: 120 NEEDKNLYALKVLDKMKLLKNFACFRQPPPRRNK 153


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
           protein F25G6.2 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -1

Query: 400 CLNHEENKNTVKIFLLSL-QKLFSTHAKFQNPHKNRNKHTNRR 275
           CLNHE   N VKI L +L  ++ +  A    P  N     NR+
Sbjct: 409 CLNHETVMNLVKISLYTLPSEMPAAFASSYTPIANAGTEPNRQ 451


>AB016838-1|BAA77824.4|  432|Caenorhabditis elegans
           Ca2+/calmodulin-dependent proteinkinase kinase protein.
          Length = 432

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 391 HEENKNTVKIFLLSLQKLFSTHAKFQNPHKNRNK 290
           +EE+KN   + +L   KL    A F+ P   RNK
Sbjct: 40  NEEDKNLYALKVLDKMKLLKNFACFRQPPPRRNK 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,069,144
Number of Sequences: 27780
Number of extensions: 216257
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)