Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J17
         (517 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138...    29   1.9  
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p...    28   4.3  
At5g24620.1 68418.m02908 thaumatin-like protein, putative simila...    27   7.5  
At5g52620.1 68418.m06533 F-box family protein contains Pfam prof...    27   9.9  
At5g46700.1 68418.m05754 senescence-associated protein, putative...    27   9.9  
At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domai...    27   9.9  
At3g28430.1 68416.m03553 expressed protein non-consensus GC dono...    27   9.9  
At1g45616.1 68414.m05200 leucine-rich repeat family protein cont...    27   9.9  

>At5g63390.1 68418.m07956 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as
           'auxin-independent growth promoter-related protein'
           based on similarity to axi 1 protein (GB:X80301)
           (GI:559920) from [Nicotiana tabacum], which, due to
           scienitific fraud was retracted. Retraction in: Schell
           J. EMBO J 1999 May 17;18(10):2908. PMID:10400497.;
           expression supported by MPSS
          Length = 559

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 204 FLKTLSSDIRGLSRFQALHCAYRQGIPNELRVDES 100
           F KTL SD+R +S   + H   RQ I N++  D S
Sbjct: 223 FKKTLRSDVRIVSSLPSTHLMSRQTIENQIPWDVS 257


>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
           protease homolog 2 SP:P93655
          Length = 924

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/62 (22%), Positives = 28/62 (45%)
 Frame = -1

Query: 367 KIFLLSLQKLFSTHAKFQNPHKNRNKHTNRRPYNINXXXXLVNYLRIFHCLREFVLKNSF 188
           ++ L+  ++L       ++P   R  H   +PY+ +      +Y+ +   LRE +  NS 
Sbjct: 213 QVILVGRRRLIIEEMVSEDPLTVRVDHLKDKPYDKDNAVIKASYVEVISTLREVLKTNSL 272

Query: 187 IR 182
            R
Sbjct: 273 WR 274


>At5g24620.1 68418.m02908 thaumatin-like protein, putative similar
           to thaumatin-like protein [Arabidopsis thaliana]
           GI:2435406; contains Pfam profile PF00314: Thaumatin
           family
          Length = 420

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 429 LTACLSALNSMGLDQYC 479
           + AC SA  + GLDQYC
Sbjct: 183 VVACKSACEAFGLDQYC 199


>At5g52620.1 68418.m06533 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 375

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +1

Query: 4   DAVINADYIQNNFFVFYTFSPKINSNEIPEM 96
           + +++ DY   +FFV+Y F+P+ N+ E  E+
Sbjct: 319 EIILSMDYTSESFFVYY-FNPERNTLEKVEI 348


>At5g46700.1 68418.m05754 senescence-associated protein, putative
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 269

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 475 YWSSPIELSADRQAVNF 425
           YW SPI++SAD   +N+
Sbjct: 185 YWISPIDMSADMDCLNW 201


>At4g01660.1 68417.m00216 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 623

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 176 RISDERVFKNEFSEAMKNS 232
           +I D +V +NEFS+ +KNS
Sbjct: 104 KIVDSKVLRNEFSDEVKNS 122


>At3g28430.1 68416.m03553 expressed protein non-consensus GC donor
           splice site at exon 16
          Length = 837

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 50  FTLFHLK*IVMKYQKCSDSSTRSSLGI 130
           F   HLK + + Y+KC +S TR   GI
Sbjct: 555 FNRKHLKMLNVSYEKCKNSLTREIKGI 581


>At1g45616.1 68414.m05200 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to disease resistance
           protein [Lycopersicon esculentum] gi|3894383|gb|AAC78591
          Length = 994

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 231 EFFIASENSFLKTLSSDIRGLSRFQALHCAYRQ 133
           EFF A +NSF  ++ S +  +S    L  +Y Q
Sbjct: 401 EFFSACDNSFTGSIPSSLFNISSLTTLGLSYNQ 433


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,022,390
Number of Sequences: 28952
Number of extensions: 182421
Number of successful extensions: 391
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)