Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J16
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 31 0.12
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 30 0.15
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 1.1
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||... 27 1.1
SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo... 27 1.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 1.9
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 1.9
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.9
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 26 2.5
SPBC887.18c |||transcription adaptor protein |Schizosaccharomyce... 26 3.3
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi... 26 3.3
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 26 3.3
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 3.3
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 25 4.4
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 4.4
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 25 5.8
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c... 25 5.8
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 25 5.8
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 25 7.7
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 25 7.7
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 25 7.7
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 7.7
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 30.7 bits (66), Expect = 0.12
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 277 INYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFEN 429
+ + K + + +K ++ +K E + E FK+ K+ L+ SY FEN
Sbjct: 10 VEFLREKTVLDAPDVKKIEFLKSKGLTAEEIQEAFKLAKNPLFPSYPRFEN 60
>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 159
Score = 30.3 bits (65), Expect = 0.15
Identities = 13/55 (23%), Positives = 27/55 (49%)
Frame = +1
Query: 268 LEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENL 432
LE ++K G + EY + K H I+N+ +EF+ + K + + ++ +
Sbjct: 39 LEDPSFKTLAGKVKDEYFVSESDEKFHPICIDNIPDEFEEIDAKTFDPHQKYKKV 93
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.5 bits (58), Expect = 1.1
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +1
Query: 181 ELIERVQLLSWAL--QQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEE 354
EL+ + LL L +Q IID + N + + NY+ +I + LD++
Sbjct: 817 ELVTEMALLKAELVKKQAIIDANANIYDKLTADHTNYETVSADINQNLKETLDKLLNGSS 876
Query: 355 KIENVTEEFKILKDKLYKSYSMFENLCVLAQAKKIL 462
+N E ++L D++ + + E L A K +
Sbjct: 877 DFKN--NEIELLHDQIRITNAKLEKREKLINASKYI 910
>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 469
Score = 27.5 bits (58), Expect = 1.1
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +1
Query: 142 DNKCHNDLLPKLEELIERVQLLSWALQQN-IIDTH-VNFTVTKSLEQINYKNRKGNITSE 315
DN+ H+D PKL E++ R L Q N + + + ++ + Q + R+ N ++
Sbjct: 327 DNEEHSDF-PKLREMLIRTHLEELKEQTNKLYEAYRTERLLSSGISQDHSVFREVNPSA- 384
Query: 316 YIKYLDEIKLHEEKIENVTEEFKIL 390
K +E LHEEK+ + E K +
Sbjct: 385 --KLEEERALHEEKLMKMEAEMKTI 407
>SPCC553.12c ||SPCC794.13|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 1.1
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Frame = -1
Query: 336 FI*VFYVFRCNVTFTIFIIYLFKTF----CYCKIDVSVDYVLL*CPRQQLHSFYKFFQFW 169
F +FY N ++I LF + C K+ ++ Y+L + S +F W
Sbjct: 138 FFLIFYYGIYNAVGLLWITKLFHIYSVNWCPSKLGGTITYILFWMFSLLVGSLVVYFTAW 197
Query: 168 *QIIVTFIIFMRLSNFLVLYI 106
QI T+I M +S + + I
Sbjct: 198 RQITFTWITLMFISMIIPIGI 218
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 1.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 353 SSCNLISSKYFMYSDVMLPLRFL 285
S L++ KY YS VMLP+ F+
Sbjct: 400 SKWELVTQKYQEYSPVMLPIAFI 422
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 1.9
Identities = 20/85 (23%), Positives = 38/85 (44%)
Frame = +1
Query: 94 SLNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLE 273
SLN + + K +N D+ ++EL++ ++ S Q N + + E
Sbjct: 999 SLNKYVDEHKSRLREFENALW-DINSSIDELVKFIEFES--KQMNSVKAERIELENQIQE 1055
Query: 274 QINYKNRKGNITSEYIKYLDEIKLH 348
Q + GN ++Y+K + +KLH
Sbjct: 1056 QRTALSEVGNNENKYLKLMSNLKLH 1080
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 26.6 bits (56), Expect = 1.9
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 91 MSLNANIQDEKITKSHKDNKCHNDLLPKLEELIER 195
M +N +I D I + ++NK ++LP +E L R
Sbjct: 127 MRINLDIVDSMIASAIENNKVATEILPPVETLRSR 161
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.2 bits (55), Expect = 2.5
Identities = 7/35 (20%), Positives = 26/35 (74%)
Frame = +1
Query: 322 KYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFE 426
++L ++++ +E+ + E+F++ ++K +++++FE
Sbjct: 1117 QHLAKVRMAKERQARIMEQFRMQQNKFLENHALFE 1151
>SPBC887.18c |||transcription adaptor protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 339
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 106 SHLNSYFSRCLMVLYKKI*NKSKNN 32
SHL + SRC +L K I K+ N
Sbjct: 239 SHLKNILSRCFSILNKNIRQKNTEN 263
>SPCC1183.04c |pet127||mitochondrial membrane protein
Pet127|Schizosaccharomyces pombe|chr 3|||Manual
Length = 524
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 241 HVNFTVTKSLEQINYKNR-KGNITSEYIKYLDEIKLHEEKIENVTE 375
H++ T S++ K R + N+ YI+ D+IK E KI N E
Sbjct: 462 HLDEKETWSIKYHFRKPRDQDNLLRNYIRLRDDIKRRESKISNPPE 507
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 327 VFYVFRCNVTFTIFIIYLFKTFCYCKIDVSV 235
V++ + ++ FT+ I L T CYC + V +
Sbjct: 397 VYFFIKFDIYFTL--IVLIMTLCYCYVTVKI 425
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 371 VTFSIFSSCNLISSKYFMYSDVMLPLRFL*FICSRLFVTVKL 246
V +IFS CN ++F+++ VM+ L F +T+KL
Sbjct: 326 VVLAIFSYCNFGIKQFFLFAAVMIYDLLLLFSFFVAILTLKL 367
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 352 EKIENVTEEFKILKDKLYKSYSMFE 426
EKI N+ ++FK+ K+ ++ FE
Sbjct: 226 EKISNIVKQFKLSCSKMQAQFTTFE 250
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.4 bits (53), Expect = 4.4
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 88 NMSLNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSW 213
N+S N+++QD I K K + L L+ ++++ +L+ +
Sbjct: 164 NLSSNSSVQDVSIDKEEMMKKQSRNALTPLDFIMKKNELMKY 205
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 58 FYTKP*DNVKNM-SLNANIQDEKITKSHKDNK 150
FY + VK + NAN++ E I K H +NK
Sbjct: 972 FYADYVNEVKRIIQRNANLEFEAIWKGHSENK 1003
>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -1
Query: 129 SNFLVLYIRI*THIFHVVLWFCIKK 55
S FL+ YI T +F+++ W+ +K
Sbjct: 41 SPFLITYINTGTFVFYLIPWYFSEK 65
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 130 KSHKDNKCHNDLLPKLEELIERVQLLSWALQQNI 231
+SH+ H D + K+ + I R LL L++N+
Sbjct: 28 RSHEQTYKHQDAIKKVMDDIHRSNLLRQELEKNL 61
>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 251
Score = 24.6 bits (51), Expect = 7.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 382 KILKDKLYKSYSMFENLCVLAQAKKILA 465
K+++D LY+ Y +C +AQA LA
Sbjct: 129 KVVQDFLYRFYETKGIICAVAQANIALA 156
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 24.6 bits (51), Expect = 7.7
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 115 DEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNI 231
DEK+ K H ++ H ++ K +E ERV L +L Q++
Sbjct: 145 DEKL-KHHAESAIHTTVINKEDEEQERVALDLQSLAQHL 182
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +1
Query: 328 LDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENLCVLA 444
+D I LH + + ++ K+K +S FE L +++
Sbjct: 304 IDYISLHYDFLGQISSHLSSYKEKFEESSKNFEKLVIMS 342
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 24.6 bits (51), Expect = 7.7
Identities = 22/113 (19%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Frame = +1
Query: 97 LNANIQDEKITKSHKDNKCHNDLLP-KLEELIERVQLLSWALQQNIIDTHVNFTVTKSLE 273
L ++ K +K+ K + +LE+ ++QL S ++++ +N + KSL
Sbjct: 675 LTNELESLKSISRNKEKKFEEAISSLQLEKSNIQLQLTSLTSERSLALEKLN-DLEKSL- 732
Query: 274 QINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENL 432
+ + K + Y +++ + +++NV+ + I +L +S + +NL
Sbjct: 733 -VLSERSKDELDESYKSLQEQLASKKIEVQNVSSQLSICNSQLEQSNHIVDNL 784
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,714
Number of Sequences: 5004
Number of extensions: 33882
Number of successful extensions: 124
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -