Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J16
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0488 - 4070506-4072277,4072455-4072557 32 0.20
08_02_0277 - 15226062-15226169,15227075-15227203,15227416-152275... 31 0.62
01_06_1753 - 39664219-39665445 31 0.62
03_01_0448 - 3444608-3444814,3446419-3446497,3446567-3446691,344... 29 1.4
05_05_0348 + 24271764-24271898,24273055-24273144,24273205-242733... 29 1.9
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 1.9
02_01_0408 - 2972240-2975380 29 1.9
03_05_0617 + 26163161-26163595,26163678-26164202 29 2.5
06_01_0223 - 1709897-1709912,1710188-1712520 28 4.4
01_06_1245 - 35693949-35694038,35694974-35695070,35695170-356952... 28 4.4
05_06_0193 + 26279105-26279229,26279725-26279833,26280362-262804... 27 5.8
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 27 5.8
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962... 27 5.8
08_02_1240 + 25504789-25504794,25505421-25505555,25505854-255059... 27 7.6
08_02_0747 - 20728073-20728081,20728167-20728353,20728810-207289... 27 7.6
01_07_0302 - 42611150-42611812,42611881-42611961,42612064-426121... 27 7.6
>05_01_0488 - 4070506-4072277,4072455-4072557
Length = 624
Score = 32.3 bits (70), Expect = 0.20
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +1
Query: 172 KLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNI-TSEYIKYLDEIKLH 348
+LE+ + V+ A ++ + H NF L + K + ++ TS K LDE+K
Sbjct: 184 ELEDELHEVRGKLDASEEKNMRCHCNFGANSELSEHEEKQQVSDVETSSLQKDLDEVKSE 243
Query: 349 EEKIENVT----EEFKILKDKLYKSYSMFE 426
+E +E V +E LK+ + + FE
Sbjct: 244 KEALEAVVLVNKDEIDRLKESMVSAAKQFE 273
>08_02_0277 -
15226062-15226169,15227075-15227203,15227416-15227583,
15227665-15228123,15228865-15229008
Length = 335
Score = 30.7 bits (66), Expect = 0.62
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = +1
Query: 349 EEKIENVTEEFKILKDKLYKSYSMFENLCVLAQAKK 456
EE +++ EE K +KDK+ +SY+ EN V+A+ K+
Sbjct: 157 EELLKSKDEEVKDMKDKVLRSYAEMEN--VIARTKR 190
>01_06_1753 - 39664219-39665445
Length = 408
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/48 (22%), Positives = 28/48 (58%)
Frame = +1
Query: 265 SLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYK 408
S Q+NY ++ + + +DE+ +HE ++ ++ F+ ++K+Y+
Sbjct: 23 SKPQVNYHSQSSESVTTVVTKMDEMSVHENAVQKMSSSFR--EEKVYE 68
>03_01_0448 -
3444608-3444814,3446419-3446497,3446567-3446691,
3446765-3446809,3447070-3447165,3447344-3447417,
3447526-3447649,3447975-3448109,3448206-3448535,
3448610-3448762,3448840-3449391,3449569-3449648,
3450395-3450506,3450579-3450749,3450820-3450879
Length = 780
Score = 29.5 bits (63), Expect = 1.4
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +1
Query: 112 QDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKN 291
+D KI HKD + N L L+E I S +++ I + FT+ I
Sbjct: 216 EDYKIYSRHKDGESKNISLISLQEAILEESKQSEINEEDFIRRMMFFTI----GYILCPT 271
Query: 292 RKGNITSEYIKYL-DEIKLHEEKIENVTEE 378
K +++S Y+ L D K+H ++T E
Sbjct: 272 TKAHVSSSYLPLLRDVTKIHTINWASLTRE 301
>05_05_0348 +
24271764-24271898,24273055-24273144,24273205-24273303,
24273725-24273826,24273912-24274088,24274193-24274398,
24274491-24274575,24274641-24274798,24274873-24274948,
24275117-24275245,24275313-24275457,24275561-24275691,
24276183-24276335,24276447-24276636,24277006-24277139,
24277248-24277406,24277659-24277964,24278040-24278216,
24278446-24278529,24278592-24278822,24278913-24279002,
24279090-24279211,24279293-24279448,24279477-24279635,
24279705-24279765,24280004-24280138,24280384-24280471,
24280548-24280620,24280883-24280994,24281691-24281711
Length = 1327
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/106 (19%), Positives = 55/106 (51%)
Frame = +1
Query: 82 VKNMSLNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVT 261
+K + KI +S K+ + + L+P+LEE I ++Q + ++ +++ +
Sbjct: 410 IKKLEDKTEKDTSKIDESTKEVEESSSLIPQLEEEIPKLQ-EKFNEEEKVLE-QIKENSR 467
Query: 262 KSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDK 399
+ E++ +++ + SE + ++I H+ ++ + E K++K+K
Sbjct: 468 EETERL--RSKLTQVRSELEPWENQIIEHKGSLDVASAEKKLMKEK 511
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/73 (24%), Positives = 38/73 (52%)
Frame = +1
Query: 217 LQQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKD 396
+QQN+ + ++ L++ + + R+ + E K D+ EK+ +EE I+ +
Sbjct: 616 VQQNVQLRNQVHLLSADLDKRDMELRE-SFQIELKKITDDAASRVEKVMKKSEEQAIMIE 674
Query: 397 KLYKSYSMFENLC 435
L++S +M+ LC
Sbjct: 675 SLHRSVAMYRKLC 687
>02_01_0408 - 2972240-2975380
Length = 1046
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 274 QINYKNRKGNITSEY--IKYLDEIKLHEEKIENVTEEFKILK 393
+++Y N G ++SE +KYL + L N+T +ILK
Sbjct: 380 RLSYNNFYGELSSEIGKLKYLSFLSLSNNSFTNITRALQILK 421
>03_05_0617 + 26163161-26163595,26163678-26164202
Length = 319
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 178 EELIERVQLLSWALQQNIIDTHVNFTVTKSLEQIN 282
+E IER+ L+WAL++ + +V V + L Q N
Sbjct: 180 DEEIERIGRLNWALEERLKGMYVEAQVWRDLAQSN 214
>06_01_0223 - 1709897-1709912,1710188-1712520
Length = 782
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Frame = +1
Query: 289 NRKGNITSEYIKYLD---EIKLHEEKIENVTEEF 381
NR+ ++ SE++K LD EIK +E K++ + EE+
Sbjct: 302 NRRHSV-SEFMKKLDQESEIKYYENKLKEINEEY 334
>01_06_1245 -
35693949-35694038,35694974-35695070,35695170-35695232,
35696079-35696232,35696303-35696489,35697001-35697314,
35698079-35698220,35698445-35698656,35699068-35699244,
35699589-35699628,35700056-35700155,35701731-35701804
Length = 549
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 268 LEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDK 399
+E I+ N++ N+T +K E++ HEEK+ + + KI + K
Sbjct: 145 IEAISLGNKE-NVTVAQVKQYCEMESHEEKLHKLVMQSKINETK 187
>05_06_0193 +
26279105-26279229,26279725-26279833,26280362-26280437,
26280527-26281472,26281564-26281615,26281945-26282067,
26282144-26282219,26282308-26282492,26282615-26282806,
26282895-26282963,26283745-26283954,26285602-26285751,
26286283-26286344,26286428-26286503,26286575-26286745
Length = 873
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/111 (17%), Positives = 51/111 (45%)
Frame = +1
Query: 97 LNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQ 276
L + D + D + ++ K+E L + ++ + ++ + N + +++
Sbjct: 216 LESRFIDAQADMLKSDPRQYDAWWEKVENLGDLLETATNKVENAAMVLGRNHDLEDKVDK 275
Query: 277 INYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFEN 429
+ + NI+ ++D L +EKI++V E F++ +++ ++EN
Sbjct: 276 LEASLAEANISKFSCYFVD---LLQEKIKSVEERFQVCNHEMHSQIELYEN 323
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 145 NKCHNDLLPKLEELIERVQLLSWALQQN 228
+K ND++ + EE+I+ ++L W LQ +
Sbjct: 665 DKHSNDMISRQEEVIQMMKLAMWCLQND 692
>04_03_0024 -
9623178-9624001,9624502-9624678,9625144-9625305,
9625520-9626032,9626801-9629153
Length = 1342
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 280 NYKNRKGNITSEYIKYLD---EIKLHEEKIENVTEEF 381
N ++ + + SE+++ LD EIK +E K++ + EE+
Sbjct: 298 NIRDNRRHSVSEFMEKLDQESEIKYYENKLKEINEEY 334
>08_02_1240 +
25504789-25504794,25505421-25505555,25505854-25505964,
25506091-25506183,25506264-25506884,25506970-25507143,
25507239-25507464,25507560-25507651,25507744-25507842,
25507936-25507984,25508071-25508124,25508312-25508484,
25508561-25508632,25508713-25508808,25509032-25509048,
25509704-25509875,25509973-25510071,25510381-25510484,
25510940-25511126,25511212-25511220
Length = 862
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 319 IKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENL 432
+ YLD + +K+ T K+ K + K YS F+ +
Sbjct: 323 VNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKI 360
>08_02_0747 -
20728073-20728081,20728167-20728353,20728810-20728913,
20729008-20729139,20729583-20729810,20730263-20730358,
20730440-20730511,20730588-20730760,20730947-20731000,
20731086-20731134,20731228-20731326,20731420-20731511,
20731607-20731832,20731927-20732100,20732186-20732809,
20732890-20733033,20733108-20733218,20733516-20733650,
20733963-20733989
Length = 911
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 319 IKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENL 432
+ YLD + +K+ T K+ K + K YS F+ +
Sbjct: 348 VNYLDFLNFGSQKVLLDTPRIKVWKRSMIKDYSKFDKI 385
>01_07_0302 -
42611150-42611812,42611881-42611961,42612064-42612150,
42612283-42612378,42612479-42612543,42612919-42612975,
42613066-42613147,42613235-42613327,42613714-42613785,
42613881-42613985
Length = 466
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +1
Query: 154 HNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNITSE 315
HN + +L + V++L+ L N+I+ + V L + N +GN +E
Sbjct: 186 HNKITTIPSDLAKNVKILNLDLGNNLIERRSDLEVLSELHYLRNLNLQGNPIAE 239
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,749,726
Number of Sequences: 37544
Number of extensions: 159342
Number of successful extensions: 553
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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