Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J16
(471 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05) 38 0.006
SB_16158| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.28
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072) 30 0.84
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.84
SB_24670| Best HMM Match : DivIC (HMM E-Value=2) 30 1.1
SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18) 29 2.6
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 29 2.6
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 28 3.4
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 28 3.4
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16) 28 4.5
SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0) 28 4.5
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 27 5.9
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 27 5.9
SB_58761| Best HMM Match : Glyco_transf_25 (HMM E-Value=3.4) 27 7.8
>SB_30415| Best HMM Match : M (HMM E-Value=6.5e-05)
Length = 1312
Score = 37.5 bits (83), Expect = 0.006
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 3/123 (2%)
Frame = +1
Query: 97 LNANIQD-EKITKSHKDNKCHND-LLPKLEELI-ERVQLLSWALQQNIIDTHVNFTVTKS 267
L ++D + K HK K ND L +L+++ +R L+S Q + V+ +T S
Sbjct: 184 LQEQVEDMAALAKKHKQLKTRNDDLQDELDQVTRKRDDLIS---TQRSLTRDVDH-LTTS 239
Query: 268 LEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENLCVLAQ 447
LE++ KNRK Y DE+ +KI+N+ + F+ K L KS+ +N VL
Sbjct: 240 LEEVQRKNRK---------YADEVDRLLKKIQNIEDSFREEKAVLIKSHESDKN-TVLEN 289
Query: 448 AKK 456
K+
Sbjct: 290 MKR 292
>SB_16158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 31.9 bits (69), Expect = 0.28
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 262 KSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKL 402
K LE+ K ++ + + + K+ DE+K E KIE +E +++DKL
Sbjct: 218 KQLEEKCTKEKEAKLQALHNKHSDEVKELEAKIEAEIQEQHVIQDKL 264
>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2520
Score = 30.3 bits (65), Expect = 0.84
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +1
Query: 310 SEYIKYLDE-IKLHEEKIENVTEEFKILKDKLYKSYSMFENLCVLAQAKKILAQ 468
++Y ++E +K +EE +EN+ +E K+ D+L +++ + + V A KK+ Q
Sbjct: 2029 ADYHSKMEEMLKKNEEDMENLNKEHKLKLDELQEAHRLDQKSEVAAIEKKLKTQ 2082
Score = 27.5 bits (58), Expect = 5.9
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 1/101 (0%)
Frame = +1
Query: 100 NANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQI 279
N ++D+K + + +LL ++EEL +V+ L ++Q +I ++
Sbjct: 1839 NEKLKDQKESHEKGAGEREKELLQQVEELSTQVKTLEQRIEQLVI-----------VKMD 1887
Query: 280 NYKNRKGNITSEYIKYLDEI-KLHEEKIENVTEEFKILKDK 399
++K + E+ ++++ K HE K+E+V +K D+
Sbjct: 1888 ALHDQKATLIEEHNTAIEKLNKEHEAKLESVERLYKAKLDE 1928
>SB_17517| Best HMM Match : CRAL_TRIO_N (HMM E-Value=0.072)
Length = 2374
Score = 30.3 bits (65), Expect = 0.84
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Frame = +1
Query: 88 NMSLNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWA-LQQNIIDTHVNFTVTK 264
N N ++ E+ + N +D++ + + + ++ A +Q H+ +
Sbjct: 209 NSQSNGAMRHEQKEEERLRNLQKSDMITRNQAALIVTDVIEKAYVQFRHEQKHLRIKKEE 268
Query: 265 SLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSMFENLCVLA 444
+E I KN+ I S+ I+ I EE+ E + +E KI +++ K E++ +
Sbjct: 269 KIELI-LKNKAEMIVSDVIRKARVIVQREEREERIKKEEKIREEERVKKQEKMEHI-IQN 326
Query: 445 QAKKILAQA 471
QA+ I+++A
Sbjct: 327 QAQFIVSEA 335
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 30.3 bits (65), Expect = 0.84
Identities = 19/86 (22%), Positives = 48/86 (55%)
Frame = +1
Query: 175 LEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEE 354
LE + + ++ +L+Q ++ T+ + +T+S + + K R+ + + + D+I + EE
Sbjct: 3006 LEATVLSSEQMANSLKQELMTTNKDLAITRSTLERSQK-REEELQEDIKQMEDKIAIIEE 3064
Query: 355 KIENVTEEFKILKDKLYKSYSMFENL 432
K + + E+F ++ L ++ S ++L
Sbjct: 3065 KKQEMVEKFWKSQNDLSEAESTIDSL 3090
>SB_24670| Best HMM Match : DivIC (HMM E-Value=2)
Length = 152
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 241 HVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYKSYSM 420
H T+TK E + K + + +E+K E+K+E E+F+ + + K
Sbjct: 15 HAQQTLTKKREAL-VKTELAGKNEKLPQAQEEVKEWEQKVEKGQEDFEAISKMIRKEMVR 73
Query: 421 FEN 429
FEN
Sbjct: 74 FEN 76
>SB_44424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1350
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Frame = +1
Query: 106 NIQDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLE---Q 276
++QD TK K + L K + +E V + +W + T V TV+ E
Sbjct: 234 SLQDVSFTKGGKQIEVRLTLPWKQQVQMEYVAIAAWPISSTNRVTRVEVTVSAPYEFLLD 293
Query: 277 INYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKI 387
+ Y N++ + ++ DE+ +H + + F I
Sbjct: 294 VTYHNKEQFNSGYRLQSNDELLVHLQSFSSNPSYFTI 330
>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1520
Score = 28.7 bits (61), Expect = 2.6
Identities = 22/70 (31%), Positives = 38/70 (54%)
Frame = +1
Query: 220 QQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDK 399
++NI D V+ TK E ++ K +KG+ S +I +DEI+ E E K+++ K
Sbjct: 54 RRNIADVTVDDERTKLREWVD-KTKKGSWISRWISDVDEIESSMMSEEEYQEREKLIQ-K 111
Query: 400 LYKSYSMFEN 429
+ + Y F+N
Sbjct: 112 MTEMY--FDN 119
>SB_13524| Best HMM Match : K_tetra (HMM E-Value=3.7e-18)
Length = 495
Score = 28.7 bits (61), Expect = 2.6
Identities = 27/106 (25%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Frame = +1
Query: 97 LNANIQDEKITKSHKDNKCHNDLLPKLEELIER--VQLLSWALQQNII--DTHVNFTVTK 264
LN +DE +TK K +++L K+EE ER + A + +I D + + T+ +
Sbjct: 242 LNQVTKDEFVTKMEKLRAKKDEMLKKIEEFEEREKAAMKKIARLEEVIAKDKNESATLRR 301
Query: 265 SLEQINYK-NRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDK 399
S ++ ++ +I + ++ L + LH +K E + K+L+D+
Sbjct: 302 SCSLTEHQFDKTEDILDQKLERL--VMLH-KKTEQDIQMLKVLEDR 344
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 28.7 bits (61), Expect = 2.6
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +1
Query: 151 CHN--DLLPK--LEELIERVQLLSWALQQNIIDTHVNFTVTK---SLEQINYKNRKGNIT 309
CHN D LP+ L+ LIE SW + N+I + + + + N+KN+
Sbjct: 1014 CHNLEDFLPEKILDLLIEEDG--SWYCRHNLISKEILRQLLSRPYGINEENWKNKLAEKA 1071
Query: 310 SEYIKYLDE 336
+++K++DE
Sbjct: 1072 IDFVKHMDE 1080
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Frame = +1
Query: 124 ITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYK--NRK 297
+ +S D + H+D + +L+E ++ L+Q + D NF+ S + N+K +
Sbjct: 1022 VKQSDSDLQGHSDSIKRLQEELKERNSAHQELEQKMQDLRENFSADLSELEQNFKIIEEE 1081
Query: 298 GNITSEYIKYLD-EIKLH-EEKIEN 366
+ ++ L+ E++L +EK+EN
Sbjct: 1082 NSALKLNVEALESELQLSVKEKLEN 1106
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +1
Query: 172 KLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIK--L 345
KLE + R QL S ++NI+D + L ++ + K E + DE + +
Sbjct: 1166 KLEAMTRREQLASEEFEKNILDVKEQYEA--QLARVKKERNKLKQKYEELTEEDEEEDAI 1223
Query: 346 HEEKIENVTEEFKILKDKL 402
+EE IE + + LK+++
Sbjct: 1224 YEETIEKQNKRLQELKEEV 1242
>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1524
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Frame = +1
Query: 217 LQQNIIDTHVNFTVTKSLEQINYK-----NRKGNITSEYIKYLDEIKLHEEKIENVTEEF 381
L+Q+ ID N + K +E + K KG + E I+ DE+ EE+++++ E+
Sbjct: 187 LKQDKIDNEQN--LLKEIESLKLKYDEIEKEKGVLEKEKIEIFDELNKLEERLQDL-EDL 243
Query: 382 KILKDKLYKSY 414
+ + +L K Y
Sbjct: 244 QAQRFELQKKY 254
>SB_39171| Best HMM Match : EzrA (HMM E-Value=0.16)
Length = 587
Score = 27.9 bits (59), Expect = 4.5
Identities = 24/109 (22%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Frame = +1
Query: 112 QDEKITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKN 291
+D ++ ++ K+NK N+ L +E I+ + + ++Q+++ + + V K ++Q ++
Sbjct: 323 RDRELERAKKENKHLNEALLAQQEAIKTLTCENESMQKSMDNLCRDVKVMK-MQQKQSRD 381
Query: 292 RKGNITSEYIKYL--DEIKLHEEKIENVTEEFKILKDKLYKSYSMFENL 432
+ E L DE++ EEK N +E +L+ + + S+ L
Sbjct: 382 LTFKMCCETQTDLLGDELESMEEKFFNYEKENSLLRGTIKSNESLIGTL 430
>SB_7186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 361 ENVTEEFKILKDKLYKSYSMFENLCVLAQAKKILAQA 471
EN++E F++ + + YS F + ++A KK+ A A
Sbjct: 44 ENLSERFRLKERSFGRQYSQFYAVRLMAMRKKLAAAA 80
>SB_38410| Best HMM Match : 7tm_1 (HMM E-Value=0)
Length = 368
Score = 27.9 bits (59), Expect = 4.5
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 207 QQLHSFYKFFQFW*QIIVTFIIFMRLSNFLVLY 109
Q LH +K FQ I + IIF L N LV+Y
Sbjct: 28 QPLHVVFKIFQA--MITILIIIFALLGNILVVY 58
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 27.5 bits (58), Expect = 5.9
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 118 EKITKSHKDNKC-HNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNR 294
+K T H + C H+ +LE QLLS ++ H++FT ++ NYK +
Sbjct: 277 QKTTLGHSNQTCMHDGSSFRLERKRFVRQLLSEKMKGK--SGHISFTAFRARNHFNYKVK 334
Query: 295 KGNITSE 315
+ ++T +
Sbjct: 335 RVSMTDQ 341
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/81 (19%), Positives = 41/81 (50%)
Frame = +1
Query: 160 DLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEI 339
D+ L +L+ER+Q++ + +Q + D + S +I Y ++ +++Y + L +
Sbjct: 90 DMTNVLRQLVERIQVVRRSYRQQLADA---ISEISSQHKIYYNKKRKQESAKYTEKLKKA 146
Query: 340 KLHEEKIENVTEEFKILKDKL 402
+ EE + ++ + L + +
Sbjct: 147 QDDEEAKKKANQQQESLLEMM 167
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 27.5 bits (58), Expect = 5.9
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 271 EQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDK 399
E + K IT + + +E K +EEKIE++T E LK K
Sbjct: 2956 ELVYVKQEMEFITRKMSGFSNERKSYEEKIESLTGEMSGLKGK 2998
>SB_58761| Best HMM Match : Glyco_transf_25 (HMM E-Value=3.4)
Length = 320
Score = 27.1 bits (57), Expect = 7.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +1
Query: 358 IENVTEEFKILKDKLYKSYSMFE 426
++ E FK+L++K Y+ Y M+E
Sbjct: 217 LDTCEEVFKLLQEKYYEEYKMYE 239
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,383,165
Number of Sequences: 59808
Number of extensions: 211638
Number of successful extensions: 635
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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