Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J16
(471 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 31 0.52
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 29 2.1
At5g18570.1 68418.m02195 GTP1/OBG family protein similar to SP|P... 28 2.8
At5g13560.1 68418.m01566 expressed protein weak similarity to SP... 28 2.8
At4g26780.1 68417.m03857 co-chaperone grpE family protein simila... 28 2.8
At3g28770.1 68416.m03591 expressed protein 28 3.7
At4g36630.2 68417.m05198 expressed protein 27 4.8
At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein con... 27 4.8
At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR cla... 27 6.4
At3g24255.1 68416.m03045 expressed protein 27 6.4
At2g21410.1 68415.m02548 vacuolar proton ATPase, putative simila... 27 6.4
At5g06560.1 68418.m00740 expressed protein contains Pfam profile... 27 8.5
At2g39560.1 68415.m04853 expressed protein 27 8.5
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 27 8.5
At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor, pu... 27 8.5
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 30.7 bits (66), Expect = 0.52
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Frame = +1
Query: 109 IQDE-KITKSHKDNKCHNDLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQINY 285
+QDE + TK N C +D L ++EEL E+++ + +A+ + H +K +E++
Sbjct: 662 VQDESEETKEANANHCEDDHLKEMEELKEKLKAMEFAIS---CEGH-----SKEIEELKQ 713
Query: 286 K-NRKGNITSEYIKYLDEIKLHEEK 357
K N K + K + +K+ EK
Sbjct: 714 KLNAKEHQIQAQDKIIANLKMKLEK 738
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 28.7 bits (61), Expect = 2.1
Identities = 12/39 (30%), Positives = 26/39 (66%)
Frame = +1
Query: 85 KNMSLNANIQDEKITKSHKDNKCHNDLLPKLEELIERVQ 201
++++ +A+I +E++ K +NK NDL+ LE+ I+ +
Sbjct: 1139 ESLTEDASIDNERVKKLADENKDLNDLVSSLEKKIDETE 1177
>At5g18570.1 68418.m02195 GTP1/OBG family protein similar to
SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
subtilis}; contains Pfam profile PF01018: GTP1/OBG
family
Length = 681
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +1
Query: 304 ITSEYIKYLDEIKLHEEKIENVTEEFKILKD 396
++S Y+K +E+KL E + V E+ + L++
Sbjct: 85 LSSSYLKVSEEVKLSESNVARVEEKIETLRE 115
>At5g13560.1 68418.m01566 expressed protein weak similarity to
SP|O42184 Restin (Cytoplasmic linker protein-170)
(CLIP-170) {Gallus gallus}
Length = 679
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +1
Query: 289 NRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYK 408
N + + EYI Y +I ++NV E+F++L+ KL K
Sbjct: 512 NPRKILEEEYIDYETKIITTFSIVDNVKEQFQVLQSKLDK 551
>At4g26780.1 68417.m03857 co-chaperone grpE family protein similar
to chaperone GrpE type 2 [Nicotiana tabacum] GI:3851640;
contains Pfam profile PF01025: co-chaperone GrpE
Length = 327
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 349 EEKIENVTEEFKILKDKLYKSYSMFENL 432
EE + EE K LKDK+ ++Y+ EN+
Sbjct: 152 EELLSEKEEEIKQLKDKVLRTYAEMENV 179
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 3.7
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +1
Query: 100 NANIQDEKITKSHKDNKCHN--DLLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLE 273
N NIQ E I S KDN N D+ PK++ Q+ ++ V+ T K+L+
Sbjct: 500 NVNIQGESIGDSTKDNSLENKEDVKPKVDANESDGNSTKERHQEAQVNNGVS-TEDKNLD 558
Query: 274 QINYKNRKGNITSEYIKYLDEIKLHEEKIE 363
I +K N S + D E++ E
Sbjct: 559 NIGADEQKKNDKSVEVTTNDGDHTKEKREE 588
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 27.5 bits (58), Expect = 4.8
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
Frame = +1
Query: 163 LLPKLEELIERVQLLSWALQQNIIDTHVNFTVTKSLEQIN--------YKNRKG--NITS 312
LLP+ +L + L+ L +N + H NF+V KSL Q YK+RKG +TS
Sbjct: 843 LLPRETKLHNLLPFLA-PLLRNSSEAHRNFSVIKSLRQSENLQVKEELYKHRKGVAQVTS 901
Query: 313 E 315
E
Sbjct: 902 E 902
>At3g60120.1 68416.m06713 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; similar to anther-specific protein ATA27
(GI:2746341) [Arabidopsis thaliana]
Length = 534
Score = 27.5 bits (58), Expect = 4.8
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
Frame = +1
Query: 103 ANIQDEKITKSHKDNKCHNDLLPKLEELIERVQ-LLSWALQQNIIDTHVNFTVTKSLEQI 279
+N+ D + T+ HK K + ++E V+ +W+L N + + + V L +
Sbjct: 406 SNLMDLQRTEYHK--KHLQSIQQAIQEDGVVVEGYFAWSLLDNC-EWNAGYGVRYGLFYV 462
Query: 280 NYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEFKILKDKLYK 408
+Y N + E EE+IE+ EE +LK + K
Sbjct: 463 DYNNGLKRFPKMSAMWFKEFLKREEEIEDSEEEEYVLKSTMNK 505
>At4g27190.1 68417.m03905 disease resistance protein (NBS-LRR
class), putative domain signature NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 985
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 82 VKNMSLNANIQDEKI-TKSHKDNKCHNDLLPKLEEL-IERVQL 204
++N+ +N N E + T + K + DLLP LEEL + RV L
Sbjct: 779 IENVIINTNSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDL 821
>At3g24255.1 68416.m03045 expressed protein
Length = 836
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 274 QINYKNRKGNITSEYIKYL-DEIKLHEEKIENVTEEFKIL 390
QI K GN+T Y++YL +E++ E + V+EE + L
Sbjct: 479 QIMVKLSDGNLTDAYLEYLRNELQSVEAESAKVSEEIERL 518
>At2g21410.1 68415.m02548 vacuolar proton ATPase, putative similar
to vacuolar proton ATPase 100-kDa subunit from
Dictyostelium discoideum P|1384136|gb|AAB49621
Length = 821
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +1
Query: 328 LDEIKLHEEKIENVTEEFKILKDKLYKSYS-MFENLCVLAQAKKILAQA 471
LD++++ E++E E DKL +SY+ + E VL +A + A A
Sbjct: 104 LDDVEVKLEELEAELVEINANNDKLQRSYNELVEYKLVLEKAGEFFASA 152
>At5g06560.1 68418.m00740 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 518
Score = 26.6 bits (56), Expect = 8.5
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = +1
Query: 172 KLEELIERVQLLSWALQQ--NIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIK- 342
+LE L E V ++Q +D N T + E ++ R +E L + K
Sbjct: 70 ELELLRETVSSQQQSIQDLYEELDEERNAASTAASEAMSMILRLQRDKAELQMELRQFKR 129
Query: 343 LHEEKIENVTEEFKILKDKLYKSYSMFENLCVLAQAKK 456
EEK+E+ +E L+D +YK + L AQA K
Sbjct: 130 FAEEKMEHDQQELLDLEDLIYKREQTIQALTFEAQAYK 167
>At2g39560.1 68415.m04853 expressed protein
Length = 233
Score = 26.6 bits (56), Expect = 8.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 230 MFCCNAQDNSCTRSISSSNFGN 165
+FCC++ N + S SSS+F N
Sbjct: 58 IFCCSSSTNPSSSSPSSSSFSN 79
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 26.6 bits (56), Expect = 8.5
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Frame = +1
Query: 79 NVKNMSLNANIQDEKITKSHKDNKCHNDLLPKLE-ELIERVQLLSWALQQNIIDTHVNFT 255
N + MSL A Q + + DN+ + K E +L+E VQ + L+ I+ +
Sbjct: 199 NNQQMSLRATFQKMREKSTQMDNE-----ISKAEFDLVETVQENA-NLRSQIVQSPDKLQ 252
Query: 256 VTKSLEQINYKNRKGNITSEYIKYLDEIKLHE--EKIEN---VTEEFKILKDKLYKSYSM 420
+++ K S + + ++ + E EK+ N V +EFK LKDKL +
Sbjct: 253 GALEEKKLVLGETKKAEQSAMVTFQEKAAILEVFEKVTNAKTVEKEFKALKDKLSEDGVA 312
Query: 421 FENL 432
+++L
Sbjct: 313 YKSL 316
>At1g08550.1 68414.m00948 violaxanthin de-epoxidase precursor,
putative (AVDE1) similar to EST gb|N37612
Length = 462
Score = 26.6 bits (56), Expect = 8.5
Identities = 15/59 (25%), Positives = 26/59 (44%)
Frame = +1
Query: 205 LSWALQQNIIDTHVNFTVTKSLEQINYKNRKGNITSEYIKYLDEIKLHEEKIENVTEEF 381
+SW ++ V K ++ N N +EY+ Y D+ + KIEN E++
Sbjct: 248 ISWRIKTLDSGFFTRSAVQKFVQDPNQPGVLYNHDNEYLHYQDDWYILSSKIENKPEDY 306
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,722,870
Number of Sequences: 28952
Number of extensions: 153387
Number of successful extensions: 533
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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