Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J15
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces...    27   1.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   1.4  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     26   3.3  
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa...    25   5.8  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   5.8  

>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 287

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 106 LKHYFE*YVPIQCLLNYLSCDNDFFVYKKTQEILQSFLNYLSKV 237
           LK  FE  + +Q  L+YL  D     +K+TQE  +   N+LS +
Sbjct: 161 LKETFENKLGVQ--LSYLDGDAGIIAHKQTQETHERIRNWLSSL 202


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 247 IVIIEYLICDIQKLKKTEVSRIIRVASIFN*YHNIAPLKNHRNPHNYVMK 396
           I+ ++Y    I  + K E+S+      IF+   N+ P       +NY++K
Sbjct: 213 IITVDYF--SIYWISKCEISKCTTTEDIFSYLKNLIPSAEKSPAYNYILK 260


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 ILVVIMIFLYIRRHRRSYKVSLITLAKLPYLL 250
           IL ++   +Y   HR  + V L+ LA  P+LL
Sbjct: 560 ILCLLQFIVYSYFHREGFSVILMGLAAWPWLL 591


>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 348 YCPIKKPSKSPQLCHEKKNVDVLLLG 425
           + P+K  SKSP   HE    D+L LG
Sbjct: 406 FSPLKNSSKSPNDNHETCVNDILSLG 431


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 221 LRKLCKISCVFLYTKKSLSQ 162
           L+KL   S  FLYT K+LSQ
Sbjct: 25  LKKLADGSLKFLYTNKNLSQ 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,676
Number of Sequences: 5004
Number of extensions: 35309
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)