Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J15
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34631| Best HMM Match : K_tetra (HMM E-Value=1e-38)                 29   1.9  
SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)                  27   7.7  

>SB_34631| Best HMM Match : K_tetra (HMM E-Value=1e-38)
          Length = 418

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 175 FFVYKKTQEILQSFLNYLSKVTILIVIIEYLICDIQKLKKTEVSRIIRVASIF 333
           F V     E L+S LN L  ++IL   I  ++          V R+IRVA +F
Sbjct: 241 FLVSPNKIEFLKSTLNILDLLSILPFYITVILARTGDFGVLRVMRVIRVARVF 293


>SB_25753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 39  LNSRVSPKHT*LN*VRHIYKHYFKTLFRMICADTM 143
           +N R +P H  L  +RH+Y+ YF  L ++ C D +
Sbjct: 48  VNPRTNPSHA-LAFIRHLYRLYFSNL-KVSCLDRL 80


>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2431

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 39  LNSRVSPKHT*LN*VRHIYKHYFKTLFRMICADTM 143
           +N R +P H  L  +RH+Y+ YF  L ++ C D +
Sbjct: 387 VNPRSNPSHA-LAFIRHLYRLYFSNL-KVSCLDRL 419


>SB_54548| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 39  LNSRVSPKHT*LN*VRHIYKHYFKTLFRMICADTM 143
           +N R +P H  L  +RH+Y+ YF  L ++ C D +
Sbjct: 120 VNPRSNPSHA-LAFIRHLYRLYFSNL-KVSCLDRL 152


>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
          Length = 867

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 143 VY*IILVVIMIFLYIRRHRRSYKVSLITLAK 235
           +Y + L VIM+FL++R +R S K S+   A+
Sbjct: 638 LYLLCLCVIMVFLHLRLYRISRKHSIAIAAE 668


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,578,501
Number of Sequences: 59808
Number of extensions: 221208
Number of successful extensions: 364
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)