Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J15
         (467 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97593-7|AAB52878.1|  591|Caenorhabditis elegans Prion-like-(q/n...    30   0.95 
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    30   0.95 
U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n...    30   0.95 
AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical ...    28   3.8  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    27   6.7  
AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin p...    27   6.7  

>U97593-7|AAB52878.1|  591|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform b protein.
          Length = 591

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 KKTEVSRIIRVASIFN*YHNIAPLKNHRNPHNYVMKRKTLT 411
           KKTE++  + V S+FN ++N        N H+   KR+T T
Sbjct: 501 KKTEMNESLPVGSVFNTHNNTEGGYRDANGHDVSYKRETQT 541


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 289 KKTEVSRIIRVASIFN*YHNIAPLKNHRNPHNYVMKRKTLT 411
           KKTE++  + V S+FN ++N        N H+   KR+T T
Sbjct: 835 KKTEMNESLPVGSVFNTHNNTEGGYRDANGHDVSYKRETQT 875


>U97593-5|AAB52880.1| 1175|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
            isoform a protein.
          Length = 1175

 Score = 29.9 bits (64), Expect = 0.95
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 289  KKTEVSRIIRVASIFN*YHNIAPLKNHRNPHNYVMKRKTLT 411
            KKTE++  + V S+FN ++N        N H+   KR+T T
Sbjct: 1085 KKTEMNESLPVGSVFNTHNNTEGGYRDANGHDVSYKRETQT 1125


>AL132895-3|CAC14400.1|  676|Caenorhabditis elegans Hypothetical
           protein Y59A8A.3 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 121 E*YVPIQCLLNYLSCD-NDFFVYKKTQEILQSFLNYLSK 234
           E Y  ++ L+  L+ D ++F  YKK QE++ + LN+  K
Sbjct: 404 ENYTRLEALIGELNRDISEFHEYKKQQEVIVNELNHREK 442


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +1

Query: 223 YLSKVTILIVIIEYLICDIQKLKKTEVSRIIRVASIFN 336
           YLS + ILI I+ ++I   + ++ + ++ I+   +IF+
Sbjct: 42  YLSVICILINILHFVILTKKSMRSSSINLIMAAVAIFD 79


>AF003383-3|ABO16467.1|  438|Caenorhabditis elegans Cyclophylin
           protein 17 protein.
          Length = 438

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 354 PIKKPSKSPQLCHEKKNVDV 413
           PI  PS  P+L H+K N D+
Sbjct: 393 PITVPSTGPELSHQKPNEDI 412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,846
Number of Sequences: 27780
Number of extensions: 186015
Number of successful extensions: 331
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)