Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J15
         (467 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57240.1 68418.m07151 oxysterol-binding family protein low si...    32   0.17 
At4g25850.1 68417.m03718 oxysterol-binding family protein contai...    27   4.8  
At4g30830.1 68417.m04373 expressed protein weak similarity to M ...    27   8.4  

>At5g57240.1 68418.m07151 oxysterol-binding family protein low
           similarity to SP|P22059 Oxysterol-binding protein 1
           {Homo sapiens}; contains Pfam profile PF01237:
           Oxysterol-binding protein
          Length = 379

 Score = 32.3 bits (70), Expect = 0.17
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 300 GKSHYTSRQHLQLIS*YCPIKKPSKSPQLCHEKKNVDVLL 419
           G++H+ S  H+ +++       P  +    HEK+NVDVLL
Sbjct: 114 GETHHVSNGHINVLAEQISHHPPVSALHATHEKENVDVLL 153


>At4g25850.1 68417.m03718 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 383

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 300 GKSHYTSRQHLQLIS*YCPIKKPSKSPQLCHEKKNVDV 413
           G++H+ S  H+ +I+       P  +    HE++N+DV
Sbjct: 119 GETHHVSNGHINVIAEQVVHHPPVSALHATHEQENIDV 156


>At4g30830.1 68417.m04373 expressed protein weak similarity to M
           protein type 1 [Streptococcus pyogenes] GI:311758;
           contains Pfam profile PF04576: Protein of unknown
           function, DUF593
          Length = 363

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = -3

Query: 105 SSVYKYDVPSLIKYV*VKLENLSCSDVAKSINS 7
           S V K +  SL+K V  +L ++  SDV KS+N+
Sbjct: 307 SGVIKQEEISLLKEVKEELSSVQSSDVKKSLNT 339


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,845,442
Number of Sequences: 28952
Number of extensions: 160592
Number of successful extensions: 268
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)