Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J14
         (439 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    28   0.72 
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   5.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   8.9  
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa...    24   8.9  

>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.9 bits (59), Expect = 0.72
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
 Frame = +3

Query: 12  VNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGF-KIAMGAFDKTRPPVAAGAT 188
           VN   + ++MG + S     TF  V +    VL+G   G   +  GA D T   +     
Sbjct: 240 VNIVGQYRSMGSKTSGNTSATFRTVLLANNVVLLGNKPGLGNVGGGALDITDADIRNINK 299

Query: 189 GLAQRALHEATKYSLERKTFGVPIAKHQAVAFML 290
              ++ + E    SL    +G    K QA+  +L
Sbjct: 300 LARKKNVFELLSTSLAPSIYGYEYVK-QAILLLL 332


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 187 VAPAATGGRVLSKAPIAILNPAPSPINTFSLGILTSSNVIPRVS 56
           +AP    G+VLSK+P+     +PS I   S+ +  ++  +P++S
Sbjct: 50  LAPKPLAGQVLSKSPLPPF--SPSKIMNRSISVPPTNISVPQIS 91


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.0 bits (52), Expect = 5.1
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +3

Query: 171  VAAGATGLAQRALHEATKYSLERKTFGVPIAKHQA 275
            + AGAT    R  HE    S ERK     + K  A
Sbjct: 1142 IGAGATATTNRDWHEVWNNSEERKAISAELDKINA 1176


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 282 FMLADMAIGVETARLAWQKSAWMVDHGQKNTVV 380
           F+  ++ I     RLAW+K A  +D    NT++
Sbjct: 635 FLSNEITIAKNWHRLAWRKVAVRLDGDAHNTMI 667


>SPCC576.15c |ksg1||serine/threonine protein kinase
           Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 139 AILNPAPSPINTFSLGIL 86
           A  N APSP+ TF+ G L
Sbjct: 420 ASTNAAPSPVGTFNRGTL 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,870,128
Number of Sequences: 5004
Number of extensions: 36096
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)