Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J14
(439 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.) 227 3e-60
SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.) 78 3e-15
SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27) 71 3e-13
SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 4e-12
SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 2e-09
SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 2e-07
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17) 41 5e-04
SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9) 33 0.10
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_35064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.8
>SB_52788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 227 bits (555), Expect = 3e-60
Identities = 109/145 (75%), Positives = 123/145 (84%)
Frame = +3
Query: 3 TRGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAG 182
T GV PGRKEQNMGQRASDTRGITFEDV +PKENVL EG GFKIAMGAFDKTRPPVA+
Sbjct: 305 TPGVTPGRKEQNMGQRASDTRGITFEDVVVPKENVLGAEGIGFKIAMGAFDKTRPPVASS 364
Query: 183 ATGLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHG 362
A GLA+RAL EATKYS+ERKT G I +HQAV F+LADMAIGVETARLA Q+SAW +D G
Sbjct: 365 AVGLARRALEEATKYSMERKTMGKYICEHQAVQFLLADMAIGVETARLATQRSAWEIDQG 424
Query: 363 QKNTVVASVAKCHASEIANKVASDA 437
++NT AS+AKC A ++ANK A+DA
Sbjct: 425 RRNTYYASIAKCLAGDVANKCATDA 449
>SB_50052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 538
Score = 78.2 bits (184), Expect = 3e-15
Identities = 50/143 (34%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Frame = +3
Query: 9 GVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAT 188
GV G E+ MG +AS+T + F++V +P ENVL GEG GFK+AM + R +A +
Sbjct: 169 GVESGPPEKKMGIKASNTAEVYFDNVPVPVENVLGGEGNGFKVAMNILNNGRFGMAGALS 228
Query: 189 GLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMA-IGVETARLAWQKSAWMVDHGQ 365
G + + +A ++ R FG I A+ +A MA + T +A+ SA M
Sbjct: 229 GTMKGLIEKAVDFAANRTQFGAKIETFGAIQEKIARMAMLHYVTESMAYMISANMDSGAT 288
Query: 366 KNTVVASVAKCHASEIANKVASD 434
V A+++K ASE A VA +
Sbjct: 289 DFQVEAAISKVFASEAAWFVADE 311
>SB_15646| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=8.3e-27)
Length = 257
Score = 71.3 bits (167), Expect = 3e-13
Identities = 42/141 (29%), Positives = 70/141 (49%)
Frame = +3
Query: 3 TRGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAG 182
T G+ +G R+S+T + F++VR+P+ N + EGAGF + M F + R AA
Sbjct: 72 TPGITLSTHLDKLGMRSSETAQVFFDNVRVPQRNRIGHEGAGFMMQMLQFQEERLFGAAN 131
Query: 183 ATGLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHG 362
+ ++ Y ERKTFG + +Q + F +A++ VE R ++ G
Sbjct: 132 MIKGLEHCINATIDYCKERKTFGNALIDNQVIHFRMAELQTEVECLRALVYQATEQYVRG 191
Query: 363 QKNTVVASVAKCHASEIANKV 425
+ T +AS+AK A + +V
Sbjct: 192 RDVTNLASMAKLKAGRLGREV 212
>SB_1643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 67.7 bits (158), Expect = 4e-12
Identities = 49/126 (38%), Positives = 62/126 (49%)
Frame = +3
Query: 3 TRGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAG 182
T G+ G KE +G RA+ T + FED RIPKEN+L G GFKIAM A D
Sbjct: 205 TPGLTLGNKEDKLGIRATSTCYLVFEDCRIPKENLLGEPGYGFKIAMAALDC-------- 256
Query: 183 ATGLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHG 362
A Y+ +R F I+K Q + LAD+A +E ARL K+A + D G
Sbjct: 257 -----------AVDYADKRMAFNQKISKLQTIQMKLADIATQLEAARLLTWKAAAIKDAG 305
Query: 363 QKNTVV 380
T V
Sbjct: 306 MNYTKV 311
>SB_11283| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 631
Score = 58.8 bits (136), Expect = 2e-09
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +3
Query: 9 GVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAT 188
G+ R +G SDT FE+VR+P+ + EG GF M F + R V AGA+
Sbjct: 447 GIQRARNIDKLGMHCSDTAEFYFENVRVPQSYRIGEEGMGFVYQMLQFVEER--VFAGAS 504
Query: 189 GLA--QRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHG 362
L +R + E +Y R FG I +Q V + LA++ VE R ++ +
Sbjct: 505 VLVSLERLIKETAEYCKGRTAFGKSILDNQYVHYRLAELQTEVELLRSLVYRTTDLHIKK 564
Query: 363 QKNTVVASVAKCHASEIANKV 425
+ + ++AS+ K A + +V
Sbjct: 565 KDSNLLASMLKLKAGRLVREV 585
>SB_24934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 52.0 bits (119), Expect = 2e-07
Identities = 31/94 (32%), Positives = 43/94 (45%)
Frame = +3
Query: 9 GVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAT 188
G + K +G R S+T + F++ RIP ENV+ G + M D R +AAG
Sbjct: 232 GFSTSPKLDKLGMRGSNTCELVFDNCRIPAENVMGEVNKGVYVLMSGLDIERLILAAGPV 291
Query: 189 GLAQRALHEATKYSLERKTFGVPIAKHQAVAFML 290
GL Q L Y R FG I + Q A ++
Sbjct: 292 GLMQACLDVTVPYLHARTAFGQKIGEFQDCASII 325
>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 51.6 bits (118), Expect = 3e-07
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Frame = +3
Query: 3 TRGVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAG 182
T G++ G+KE +G RAS T + F++V++P +VL G G+K A+G ++ R + A
Sbjct: 272 TPGLSIGKKEDKLGIRASSTCPVHFDNVKVPSSSVLGEVGHGYKYAIGMLNEGRIGIGAQ 331
Query: 183 AT--GLAQ-RALHEATKY----SLERKTFGVPIAKHQAVAFMLADMAIGVETAR-LAW 332
A +A+ R EA + + RK G+P+ + A+A A + T++ + W
Sbjct: 332 AMQHQIAEVRTKIEAARLLVYNAARRKEAGLPVVREGAMAKYFASEVATLTTSKCMEW 389
>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 45.2 bits (102), Expect = 2e-05
Identities = 24/70 (34%), Positives = 39/70 (55%)
Frame = +3
Query: 147 AFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARL 326
AFD R P GLAQR+L + +++R FG +A+ V +A+ + +E ARL
Sbjct: 235 AFDHVRVPACNMILGLAQRSLELMLQRAVDRVAFGTRLAEKSIVQQQIAESRMEIEYARL 294
Query: 327 AWQKSAWMVD 356
K+A+++D
Sbjct: 295 MVLKAAYLLD 304
>SB_47347| Best HMM Match : Acyl-CoA_dh_1 (HMM E-Value=1e-17)
Length = 551
Score = 40.7 bits (91), Expect = 5e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 69 ITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRAL 209
+ F +VR+PKEN+++G G GF+IA G R G A+R+L
Sbjct: 426 LEFVNVRVPKENIILGPGRGFEIAQGRLGPGRIHHCMRLIGHAERSL 472
>SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9)
Length = 410
Score = 33.1 bits (72), Expect = 0.10
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +3
Query: 111 IGEG-AGFKIAMGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTFGVPIAKHQAVAFM 287
IG+G A K+ G + PP A A +AL +A+K E HQ +
Sbjct: 73 IGQGQASAKLFCGIMNMPPPPKAK-AYNCHNKALLKASKAVAEESISVAGQEVHQLKSTS 131
Query: 288 LADMAIGVETARLAWQKSAWMVDHGQKNTVVASVAKCHASEIANKV 425
+D A + WQ+ + + +G + KC A E+ +KV
Sbjct: 132 NSDFANSPVSCDGTWQRRGYSLLNGCVTVLSTDTGKCLAFEVLSKV 177
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/81 (24%), Positives = 35/81 (43%)
Frame = +3
Query: 21 GRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQ 200
G +N Q++SD+R + I + IG G+G + + G +G+A
Sbjct: 122 GEPTENPSQQSSDSRNEDITEHGINNASFTIGSGSG-AVNSNTLSSVKRSGTVGTSGMAD 180
Query: 201 RALHEATKYSLERKTFGVPIA 263
A + S++R G+ IA
Sbjct: 181 TA--DCLPNSVDRSKEGIEIA 199
>SB_35064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 27.1 bits (57), Expect = 6.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -2
Query: 435 HPKRPYSRSRMRGISPPKLQLCSFDHDRPSRRISAKRDELFRL 307
H + SR R +PP+ L S D D+ + +RD+ RL
Sbjct: 69 HTAQGVKASRKRKTAPPENTLSSSDDDKEGAKGPKRRDQADRL 111
>SB_22526| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 666
Score = 27.1 bits (57), Expect = 6.8
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Frame = +3
Query: 189 GLAQRALHEA---TKYS----LERKTFGVPIAKHQAVAFMLADMAIGV-ETARLAWQKSA 344
GL++R H+A T Y + R + G+ IAK V +AD + ETAR +
Sbjct: 548 GLSEREAHDALNQTAYRDLSFITRDSLGMVIAK---VIGNIADRFAKLHETART---QLI 601
Query: 345 WMVDHGQKNTVVASVAKCHA 404
W+ KN+V+ + CHA
Sbjct: 602 WLTSEFVKNSVIGTEGLCHA 621
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,829,360
Number of Sequences: 59808
Number of extensions: 300912
Number of successful extensions: 710
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 847047381
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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