Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J14
         (439 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD) iden...    74   5e-14
At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low simi...    67   4e-12
At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical ...    40   6e-04
At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to ac...    31   0.45 
At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P4...    28   3.2  
At2g20120.1 68415.m02351 expressed protein contains Pfam domain,...    28   3.2  
At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong simil...    28   3.2  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    27   4.2  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    27   4.2  
At4g22190.1 68417.m03208 expressed protein                             27   7.3  
At4g09080.1 68417.m01497 chloroplast outer membrane protein, put...    27   7.3  
At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to ac...    27   7.3  

>At3g45300.1 68416.m04891 isovaleryl-CoA-dehydrogenase (IVD)
           identical to isovaleryl-CoA-dehydrogenase precursor
           [Arabidopsis thaliana] GI:5596622
          Length = 409

 Score = 73.7 bits (173), Expect = 5e-14
 Identities = 44/143 (30%), Positives = 71/143 (49%)
 Frame = +3

Query: 9   GVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAT 188
           G +  +K   +G R SDT  + FE+  +P+EN+L  EG G  + M   D  R  +AAG  
Sbjct: 220 GFSTAQKLDKLGMRGSDTCELVFENCFVPEENILDKEGKGVYVLMSGLDLERLVLAAGPL 279

Query: 189 GLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHGQK 368
           G+ Q  L     Y  +R+ FG P+ + Q +   +ADM   ++++R      A   D+G+ 
Sbjct: 280 GIMQACLDNVLPYIRQREQFGRPVGEFQFIQGKVADMYTALQSSRSYVYSVARDCDNGKV 339

Query: 369 NTVVASVAKCHASEIANKVASDA 437
           +    +     A+E A +VA  A
Sbjct: 340 DPKDCAGTILCAAERATQVALQA 362


>At3g06810.1 68416.m00808 acyl-CoA dehydrogenase-related low
            similarity to acyl-CoA dehydrogenase [Acinetobacter sp.
            NCIMB9871] GI:14587418; contains Pfam profiles PF01636:
            Phosphotransferase enzyme family, PF00441: Acyl-CoA
            dehydrogenase C-terminal domain, PF02770: Acyl-CoA
            dehydrogenase middle domain
          Length = 824

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 43/125 (34%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
 Frame = +3

Query: 69   ITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRALHEATKYSLERKTF 248
            I+FE+V +P +N+L+GEG GF+IA G     R        G A+R +    + +L RKTF
Sbjct: 650  ISFENVVVPAKNILLGEGRGFEIAQGRLGPGRLHHCMRLIGAAERGMELMAQRALSRKTF 709

Query: 249  GVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDH--GQKNTVVASVAKCHASEIANK 422
            G  IA+H +    LA + + +E  RL   ++A  +D    +K   + ++AK  A  +A K
Sbjct: 710  GKFIAQHGSFVSDLAKLRVELEGTRLLVLEAADHLDKFGNKKARGILAMAKVAAPNMALK 769

Query: 423  VASDA 437
            V   A
Sbjct: 770  VLDTA 774


>At3g51840.1 68416.m05685 short-chain acyl-CoA oxidase identical to
           Short-chain acyl CoA oxidase [Arabidopsis thaliana]
           GI:5478795; contains InterPro entry IPR006089: Acyl-CoA
           dehydrogenase
          Length = 436

 Score = 40.3 bits (90), Expect = 6e-04
 Identities = 36/141 (25%), Positives = 56/141 (39%)
 Frame = +3

Query: 9   GVNPGRKEQNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGAT 188
           G+   +    +G R      I  ++V +P E+ L G  + F+        +R  VA    
Sbjct: 238 GLKATKIPNKIGLRMVQNGDILLQNVFVPDEDRLPGVNS-FQDTSKVLAVSRVMVAWQPI 296

Query: 189 GLAQRALHEATKYSLERKTFGVPIAKHQAVAFMLADMAIGVETARLAWQKSAWMVDHGQK 368
           G++        +Y  ERK FG P+A  Q     L  M   V+   L   +   + + GQ 
Sbjct: 297 GISMGIYDMCHRYLKERKQFGAPLAAFQLNQQKLVQMLGNVQAMFLMGWRLCKLYETGQM 356

Query: 369 NTVVASVAKCHASEIANKVAS 431
               AS+ K   S  A + AS
Sbjct: 357 TPGQASLGKAWISSKARETAS 377


>At4g16760.1 68417.m02531 acyl-CoA oxidase (ACX1) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044214
          Length = 675

 Score = 30.7 bits (66), Expect = 0.45
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
 Frame = +3

Query: 21  GRKEQNMGQRASDTRGITFEDVRIPKENVLI--------GE----GAGFKIAMGAFDKTR 164
           G K  N    + D   + F+ VRIP++ +L+        GE        ++  G     R
Sbjct: 226 GTKMGNGAYNSMDNGFLMFDHVRIPRDQMLMRLSKVTREGEYVPSDVPKQLVYGTMVYVR 285

Query: 165 PPVAAGATGLAQRALHEATKYSLERKTFG 251
             + A A+    RA+  AT+YS  R+ FG
Sbjct: 286 QTIVADASNALSRAVCIATRYSAVRRQFG 314


>At5g04660.1 68418.m00474 cytochrome P450, putative cytochrome P450
           77A3p, Glycine max., PIR:T05948
          Length = 512

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 298 WQSESKQLVSLGRNPPGWSIM 360
           W S SK+ ++L   PPGW ++
Sbjct: 31  WNSNSKKRLNLPPGPPGWPVV 51


>At2g20120.1 68415.m02351 expressed protein contains Pfam domain,
           PF04367: Protein of unknown function (DUF502); identical
           to cDNA putative membrane protein COV (COV) GI:30059123
          Length = 268

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 332 PSETSCFDSDCHIGEHECDSLVFRDWNAERF 240
           PS +S   S  H   HE  SL  R W +++F
Sbjct: 37  PSSSSSASSSSHQSSHETLSLFIRGWASKKF 67


>At1g06310.1 68414.m00667 acyl-CoA oxidase, putative strong
           similarity to acyl-CoA oxidase ACX3 GI:8163758 from
           [Arabidopsis thaliana]
          Length = 675

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
 Frame = +3

Query: 39  MGQRASDTRGITFEDVRIPKENVL------IGEG---AGFKIAMGAFDKTRPPVAAGATG 191
           +G    D   I F+++RIP+EN+L      + +G   +  K     F     P+ +G   
Sbjct: 279 IGLNGVDNGRIWFDNLRIPRENLLNSVADVLADGKYVSSIKDPDQRFGAFLAPLTSGRVT 338

Query: 192 LAQRALHE-------ATKYSLERKTFGV 254
           +A  A++        A +YSL R+ F V
Sbjct: 339 IASSAIYSAKLGLAVAIRYSLSRRAFSV 366


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = -2

Query: 438 PHPKRPYSRSRMRGISPPKLQLCSFDHDRPSRRISAKRDELFRLRLPYRRA*MRQLGVSR 259
           PH +RP S  R RG +PP+ +  S     PSR  S       R R P R +  R++  S 
Sbjct: 242 PHRRRPGSPIRRRGDTPPRRRPAS-----PSRGRSPSSPPPRRYRSPPRGS-PRRIRGSP 295

Query: 258 LERRT 244
           + RR+
Sbjct: 296 VRRRS 300


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 23/65 (35%), Positives = 32/65 (49%)
 Frame = -2

Query: 438 PHPKRPYSRSRMRGISPPKLQLCSFDHDRPSRRISAKRDELFRLRLPYRRA*MRQLGVSR 259
           PH +RP S  R RG +PP+ +  S     PSR  S       R R P R +  R++  S 
Sbjct: 249 PHRRRPGSPIRRRGDTPPRRRPAS-----PSRGRSPSSPPPRRYRSPPRGS-PRRIRGSP 302

Query: 258 LERRT 244
           + RR+
Sbjct: 303 VRRRS 307


>At4g22190.1 68417.m03208 expressed protein
          Length = 387

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 247 SAFQSRNTKLSHSCSPIWQSE-SKQLVSLGRNPPGWSI 357
           SA  SR+     S S  W S  S+  V LGRN P W +
Sbjct: 246 SAPCSRSNSTGESKSRKWPSSPSRNGVHLGRNSPVWQV 283


>At4g09080.1 68417.m01497 chloroplast outer membrane protein,
           putative similar to chloroplastic outer envelope
           membrane protein (OEP75) [Pisum sativum] GI:633607
          Length = 407

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +3

Query: 33  QNMGQRASDTRGITFEDVRIPKENVLIGEGAGFKIAMGAFDKTRPPVAAGATGLAQRALH 212
           +N+ ++   T G+ FE++    EN  I E        G      PP     TG+   A  
Sbjct: 160 ENLTRQRELTYGVMFEEIITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHIATL 219

Query: 213 EA 218
           +A
Sbjct: 220 QA 221


>At1g06290.1 68414.m00665 acyl-CoA oxidase (ACX3) identical to
           acyl-CoA oxidase ACX3 [Arabidopsis thaliana] GI:8163758,
           GI:8515709
          Length = 675

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
 Frame = +3

Query: 39  MGQRASDTRGITFEDVRIPKENVL------IGEG---AGFKIAMGAFDKTRPPVAAGATG 191
           +G    D   I F+++RIP+EN+L        +G   +  K     F     P+ +G   
Sbjct: 279 IGLNGVDNGRIWFDNLRIPRENLLNAVADVSSDGKYVSSIKDPDQRFGAFMAPLTSGRVT 338

Query: 192 LAQRALHE-------ATKYSLERKTFGV 254
           +A  A++        A +YSL R+ F V
Sbjct: 339 IASSAIYSAKVGLSIAIRYSLSRRAFSV 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,154,135
Number of Sequences: 28952
Number of extensions: 206100
Number of successful extensions: 557
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)