Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J13
(511 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 1e-08
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39) 47 1e-05
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 44 1e-04
SB_33407| Best HMM Match : UQ_con (HMM E-Value=0) 40 0.001
SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05) 40 0.002
SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06) 37 0.008
SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.045
SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.24
SB_15708| Best HMM Match : UQ_con (HMM E-Value=0) 32 0.24
SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017) 31 0.42
SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025) 31 0.73
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45) 29 2.2
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8) 29 2.9
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 2.9
SB_44528| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.9
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8) 28 5.1
SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15) 28 5.1
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 27 6.8
SB_29415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.0
SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1) 27 9.0
>SB_21041| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 56.4 bits (130), Expect = 1e-08
Identities = 39/106 (36%), Positives = 54/106 (50%)
Frame = +2
Query: 194 SNAENVCPQALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRV 373
SN EN PQ + VARE+ L PP G+K+ D+D TD+ A I+G
Sbjct: 97 SNVENFSPQIIKQVAREIHGLTNDPPEGIKVFSNDEDITDIQASIEG------------- 143
Query: 374 RLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRPE 511
PR +FL P+V+ + GE+CVNTLK+DW+P+
Sbjct: 144 ------------PR-FFLTK-IFHPNVAKN-GEICVNTLKKDWKPD 174
>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
Length = 841
Score = 46.8 bits (106), Expect = 1e-05
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = +2
Query: 248 RRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPR 415
R L G+K++L D+ FT + I GP ETP+ GGT+ + +V+ +P + P+
Sbjct: 667 RHNRLDQKSGIKVELVDETFTKLKGEIRGPPETPFEGGTYNLDIVIPETYPFNPPK 722
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFT-DVLALIDGPAETPYAGGTFRVRLVLGREF 397
A+ ++ EL++L P G +++ D+ T + I GP T YAGG F+ + ++
Sbjct: 1125 AVRALQLELKKLTEEPVEGFTVEVPDESNTFEWDVAIFGPPGTLYAGGYFKAHMSFPHDY 1184
Query: 398 PASAPRAYFLNAPCSTPDVSPDTGEVCVNTL 490
P S P FL P++ ++G+VC++ L
Sbjct: 1185 PYSPPTFRFLTKMWH-PNIY-ESGDVCISIL 1213
>SB_33407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 226
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/96 (30%), Positives = 38/96 (39%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFP 400
A + REL + L PPP + DD + + I GP + Y GG F L FP
Sbjct: 96 AAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVF----FLDIHFP 151
Query: 401 ASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
+ P P G VC++ LK W P
Sbjct: 152 SDYP-------------FKPPKGMVCLDILKDSWSP 174
>SB_7202| Best HMM Match : UQ_con (HMM E-Value=5.9e-05)
Length = 200
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFP 400
A + REL + L PPP + DD + + I GP + Y GG F + + ++P
Sbjct: 136 AAKRIQRELTEITLDPPPNCSAGPKGDDLYEWYSTILGPPGSVYEGGVFFLDIHFPSDYP 195
Query: 401 ASAPR 415
P+
Sbjct: 196 FKPPK 200
>SB_5638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 299 DDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPD---TG 469
DD + ALI GP +TPY GG F + ++P PR + +P+ G
Sbjct: 8 DDIPKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGSGQVRFNPNLYRNG 67
Query: 470 EVCVNTL 490
+VC++ +
Sbjct: 68 KVCLSII 74
>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
Length = 739
Score = 37.1 bits (82), Expect = 0.008
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Frame = +2
Query: 278 VKLQLRDDDFTDVL-ALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCS---T 445
V+L +R D D+ +I+GPA TPY G F ++L +P + P ++L+ C+
Sbjct: 625 VRLTVRPDH--DIFRVMIEGPAGTPYDHGLFAFDILLPANYPDAPPSFHYLSM-CNGRLN 681
Query: 446 PDVSPDTGEVCV 481
P++ D G+VC+
Sbjct: 682 PNLYED-GKVCI 692
>SB_41378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 473
Score = 34.7 bits (76), Expect = 0.045
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +2
Query: 296 DDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEV 475
D+D ++ GP T Y G F+ +V +E+P P F+ + P+V + GEV
Sbjct: 359 DEDLYKWEIMVVGPPGTYYEEGYFKASMVFPKEYPQRPPTLTFI-SDIWHPNVHKN-GEV 416
Query: 476 CVNTL 490
C++ L
Sbjct: 417 CISIL 421
>SB_28812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 32.3 bits (70), Expect = 0.24
Identities = 20/79 (25%), Positives = 35/79 (44%)
Frame = +2
Query: 191 MSNAENVCPQALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFR 370
M N+ A+ + RE + L + Q +D+ + + GP +T +AGG +
Sbjct: 1 MEKQYNLRSPAVKRLMREAKELR-NATELYHAQPLEDNLFEWHFTVRGPPDTEFAGGRYH 59
Query: 371 VRLVLGREFPASAPRAYFL 427
R++L E+P P L
Sbjct: 60 GRIILPPEYPMKPPSIMLL 78
>SB_30411| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 710
Score = 32.3 bits (70), Expect = 0.24
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 332 GPAETPYAGGTFRVRLVLGREFPASAP 412
GP TPY GG ++VR+ L ++P +P
Sbjct: 56 GPVGTPYEGGVWKVRVDLPEKYPFKSP 82
>SB_15708| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 145
Score = 32.3 bits (70), Expect = 0.24
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 335 PAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTLK-RDWRP 508
P PY G FR+ + E+P P+ F P++ + G+VC+ + +W+P
Sbjct: 32 PEMPPYNKGAFRIEICFPAEYPFKPPKITF-KTKIYHPNID-EKGQVCLPIISPENWKP 88
>SB_3717| Best HMM Match : UQ_con (HMM E-Value=0.00017)
Length = 123
Score = 31.5 bits (68), Expect = 0.42
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 326 IDGPAETPYAGGTFRVRLVLGREFPASAPRAYFL 427
+ GP +T +AGG + R++L E+P P L
Sbjct: 10 VRGPPDTEFAGGRYHGRIILPPEYPMKPPSIMLL 43
>SB_38997| Best HMM Match : ResIII (HMM E-Value=0.0025)
Length = 698
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 193 VERGECVPPGAEQRGARTASPGVASTPWRKAAA 291
V R +CV E +R PGV S PW AA
Sbjct: 487 VRRSQCVATHVEADSSRRRPPGVPSLPWDLVAA 519
>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
Length = 727
Score = 29.1 bits (62), Expect = 2.2
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +2
Query: 227 NSVARELRRLALHPPPGV---KLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREF 397
N +L RLA HPP + R D + L ++G + P +G +V+ R
Sbjct: 91 NPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSV 150
Query: 398 PASAPRAYFLNAPC--STPDVSPDTGE 472
A+ A C + P P TGE
Sbjct: 151 TATLASADVRRCFCRYAPPHFDPSTGE 177
>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
Length = 638
Score = 28.7 bits (61), Expect = 2.9
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Frame = +2
Query: 227 NSVARELRRLALHPPPGV---KLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREF 397
N +L RLA HPP + R D + L ++G + P +G +V+ R
Sbjct: 66 NPGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVVTRSV 125
Query: 398 PAS-----APRAYFLNAPCSTPDVSPDTG 469
A+ R + AP D+ PD G
Sbjct: 126 TATLASADVRRCFCRYAPPRESDIKPDVG 154
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 28.7 bits (61), Expect = 2.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 175 QWRMCDVERGECVPPGAEQRGARTASPGVASTPWRK 282
+W ++R P +E R R A PG+ PWRK
Sbjct: 1598 RWSSSVIDRPLHTRPRSELRRQRFALPGLGCYPWRK 1633
>SB_44528| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Frame = +2
Query: 227 NSVARELRRLALHPPPGV---KLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREF 397
N+ +L RLA HPP + R D + L ++G + P +G +V+ R
Sbjct: 77 NTGVTQLNRLAAHPPFASWRNSEEARTDRPSQQLRSLNGEWDAPCSGALSAAGVVITRSV 136
Query: 398 PASAPRAYFLNAPC---STPDVSPDTGEV 475
A+ A C +TP V+ G++
Sbjct: 137 TATLASADVRRCFCPLRTTPSVAEQEGQL 165
>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2680
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = -2
Query: 492 FSVFTHTSPVSGDTSGVEHGAFRKYARGADAGNSRPSTS 376
F V T+T+P SGDTS ++ A G +G S S S
Sbjct: 1158 FRVVTYTAPTSGDTS--SEWRRQRTAEGVPSGESAMSPS 1194
>SB_45575| Best HMM Match : Keratin_B2 (HMM E-Value=8.8)
Length = 271
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 356 GGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSP 460
GG R R FP AP L PC PD P
Sbjct: 133 GGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCP 167
>SB_39266| Best HMM Match : DCX (HMM E-Value=9.4e-15)
Length = 347
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = +2
Query: 356 GGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSP 460
GG R R FP AP L PC PD P
Sbjct: 162 GGETRQDYKDTRRFPLEAPSCALLFRPCRLPDTCP 196
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 438 HGAFRKYARGADAGNSRPSTSRT 370
H AF KY+ GAD G S P +S T
Sbjct: 1579 HVAFLKYSNGADVGFSFPLSSDT 1601
>SB_222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2323
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = -2
Query: 474 TSPVSGDTSGVEHGAFRKYARGADAGNSRPSTSRT--RNVPPAYGVSAG 334
TSP + TSG E G +G+S P T+ T P A GV G
Sbjct: 301 TSPATTPTSGTEGAGTGGPGTGGPSGSSNPPTTGTPASASPTAPGVKGG 349
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 27.5 bits (58), Expect = 6.8
Identities = 33/118 (27%), Positives = 44/118 (37%), Gaps = 2/118 (1%)
Frame = +1
Query: 124 DN*KEALQDASEGVSPGQWRMCDVERGECVPPGAEQRGART-ASPGVAST-PWRKAAAPR 297
DN L + VSP Q +G+ P G + +R+ SP T P ++ PR
Sbjct: 504 DNSTSPLPRQTRRVSPTQAVRPSSTQGQSAPVGRTKSPSRSYTSPRQRRTSPNNRSPPPR 563
Query: 298 R*LHRCAGAHXXXXXXXXXXXHISRATSAGTRIPRVCAARVFPKRAVFHPRRITGHGR 471
R R SR + R+ R V P+R V HPRR H R
Sbjct: 564 R---RSPSPRRPSPSPRRRSTSPSRKSPPPRRVHRHQDV-VHPRRDVVHPRRDVVHPR 617
>SB_29415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 483
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 265 MQRQATQFSRHAVQRLGAHILRVRHRTSST 176
+Q +A + RH + +G H + VRH T T
Sbjct: 37 VQFEAAAYPRHELVHIGVHAVLVRHSTFLT 66
>SB_52889| Best HMM Match : Pex2_Pex12 (HMM E-Value=1)
Length = 623
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 227 SAPGGTHSPRSTSHILHWPGLTPSLASCNAS 135
S P GTH+PR+ IL G P+L + N S
Sbjct: 13 SEPNGTHTPRALRQIL---GENPTLENVNLS 40
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,474
Number of Sequences: 59808
Number of extensions: 335536
Number of successful extensions: 3449
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3449
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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