Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J13
(511 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 60 1e-09
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 59 2e-09
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 57 6e-09
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 57 6e-09
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 53 1e-07
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 52 3e-07
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 51 6e-07
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 51 6e-07
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 45 4e-05
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 45 4e-05
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 44 6e-05
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 42 3e-04
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 41 5e-04
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 41 5e-04
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 40 0.001
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 38 0.003
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 38 0.004
U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin conju... 37 0.007
AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical... 35 0.039
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 34 0.052
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 31 0.49
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 31 0.49
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 31 0.49
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 31 0.49
AF045645-2|AAC02609.1| 299|Caenorhabditis elegans Hypothetical ... 28 3.4
Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical pr... 28 4.5
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 4.5
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 4.5
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 27 6.0
AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical ... 27 6.0
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 27 7.9
U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical pr... 27 7.9
U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled rel... 27 7.9
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +2
Query: 233 VARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAP 412
+ +E +RL P PG+ + + +I GP ++P+AGG F++ L L E+P +AP
Sbjct: 9 IIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYPMAAP 68
Query: 413 RAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
+ F+ P++ G +C++ LK W P
Sbjct: 69 KVRFM-TKIYHPNID-KLGRICLDILKDKWSP 98
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 59.3 bits (137), Expect = 2e-09
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +2
Query: 221 ALNSVARELRRLALHPP---PGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGR 391
A N + RE + + + G+ +++ +++ T++ I GP +TPYAGG F + + +
Sbjct: 5 AFNRLQRECKEVVTNSEISETGIMIEILNENLTEIKGHIRGPPDTPYAGGMFDLDIKIPD 64
Query: 392 EFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDW 502
++P S P F + P+VS TG +C++ LK W
Sbjct: 65 QYPFSPPNVKF-STKIWHPNVSSQTGVICLDILKDQW 100
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +2
Query: 239 RELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRA 418
R+ ++L PP GV +D+ A+I GP ETP+ GTF++ L E+P P
Sbjct: 11 RDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTV 70
Query: 419 YFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
F+ + P+V D G +C++ L+ W P
Sbjct: 71 KFI-SKMFHPNVYAD-GSICLDILQNRWSP 98
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 57.2 bits (132), Expect = 6e-09
Identities = 30/90 (33%), Positives = 47/90 (52%)
Frame = +2
Query: 239 RELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRA 418
R+ ++L PP GV +D+ A+I GP ETP+ GTF++ L E+P P
Sbjct: 11 RDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTV 70
Query: 419 YFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
F+ + P+V D G +C++ L+ W P
Sbjct: 71 KFI-SKMFHPNVYAD-GSICLDILQNRWSP 98
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 52.8 bits (121), Expect = 1e-07
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 14/90 (15%)
Frame = +2
Query: 275 GVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAP---------RAY-F 424
G+ +++++++ D+ I GP TPYAGGTF +++ + +P P RA+ +
Sbjct: 40 GIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEIKVDIPEHYPFEPPKVTEIIFHIRAFEY 99
Query: 425 LNAPCST----PDVSPDTGEVCVNTLKRDW 502
+ A T P++S TG +C++ LK W
Sbjct: 100 IQAKFVTRIWHPNISSQTGTICLDILKDKW 129
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 51.6 bits (118), Expect = 3e-07
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGV-KLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREF 397
AL + E + L PP G+ + +D+F + LI GP ET +A G F R+ +++
Sbjct: 5 ALKRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDY 64
Query: 398 PASAPRAYFLNAPCSTPDVSPDTGEVCVNTL 490
P S P+ F P++ D G VC++ L
Sbjct: 65 PLSPPKMRF-TCGIFHPNIYAD-GRVCISIL 93
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFP 400
AL + +EL+ L PP DD A I GP E+PY GG F + + ++P
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 401 ASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
P+ F P+++ G +C++ L+ W P
Sbjct: 62 FKPPKVAF-TTRIYHPNIN-SNGSICLDILRSQWSP 95
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 50.8 bits (116), Expect = 6e-07
Identities = 28/96 (29%), Positives = 44/96 (45%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFP 400
AL + +EL+ L PP DD A I GP E+PY GG F + + ++P
Sbjct: 2 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 61
Query: 401 ASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
P+ F P+++ G +C++ L+ W P
Sbjct: 62 FKPPKVAF-TTRIYHPNIN-SNGSICLDILRSQWSP 95
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 IDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTL--KRD 499
I G +T + GG +R+R++ +FP++ P+ F P P+V P +G VC++ L +D
Sbjct: 45 IPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKF-EPPLFHPNVYP-SGTVCLSLLDENKD 102
Query: 500 WRP 508
W+P
Sbjct: 103 WKP 105
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 44.8 bits (101), Expect = 4e-05
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +2
Query: 326 IDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTL--KRD 499
I G +T + GG +R+R++ +FP++ P+ F P P+V P +G VC++ L +D
Sbjct: 45 IPGRKDTIWEGGLYRIRMLFKDDFPSTPPKCKF-EPPLFHPNVYP-SGTVCLSLLDENKD 102
Query: 500 WRP 508
W+P
Sbjct: 103 WKP 105
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 44.0 bits (99), Expect = 6e-05
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +2
Query: 314 VLALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVN 484
+ +I G ETPY GG F + + +G +P AP F+ P VSP G +C++
Sbjct: 381 IQGIIKGVEETPYEGGIFELDIKIGESYPFKAPTVKFI-TKIWHPSVSPFDGTICLH 436
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 41.5 bits (93), Expect = 3e-04
Identities = 17/65 (26%), Positives = 35/65 (53%)
Frame = +2
Query: 308 TDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNT 487
++ + GP +T Y G +R+R+ + ++P +P FLN P++ +G VC++
Sbjct: 33 SEFIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLN-KIFHPNIDEASGTVCLDV 91
Query: 488 LKRDW 502
+ + W
Sbjct: 92 INQAW 96
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Frame = +2
Query: 296 DDDFTDVL-ALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSP---D 463
D+ D++ LI GP +TPYA G F + +P S P+ FL +P +
Sbjct: 438 DEGRVDIIKVLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYN 497
Query: 464 TGEVCVNTLKR-DWRPE 511
G++C++ L + RPE
Sbjct: 498 DGKICLSILGTWEGRPE 514
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 41.1 bits (92), Expect = 5e-04
Identities = 26/100 (26%), Positives = 45/100 (45%)
Frame = +2
Query: 191 MSNAENVCPQALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFR 370
M + + AL ++ EL+ L P G + + +D+ I GP +T Y GG F+
Sbjct: 1 MDSKASTSSGALRALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFK 60
Query: 371 VRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTL 490
+ +P S P F P+V + G++C++ L
Sbjct: 61 ASIRFPSNYPYSPPSMKF-TTKVWHPNVY-ENGDLCISIL 98
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 2/98 (2%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQ--LRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGRE 394
A + +EL +L P G+ + +D + G T YAG F ++ G +
Sbjct: 5 ATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGPQ 64
Query: 395 FPASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKRDWRP 508
+P ++P F+ G +C++ L DW P
Sbjct: 65 YPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTP 102
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 38.3 bits (85), Expect = 0.003
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +2
Query: 239 RELRRLALHPPPGVKLQLRDD-DFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPR 415
++L + P G L DD D L+ GP +T Y GG F+ L R++P P+
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 416 AYFLNAPCSTPDVSPDTGEVCVNTL 490
F+ + P++ + G VC++ L
Sbjct: 70 MKFI-SEIWHPNIDKE-GNVCISIL 92
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/69 (27%), Positives = 34/69 (49%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFP 400
AL + ++ +RL P P +K + + + +I G +TPY GG + +L+ ++FP
Sbjct: 9 ALQRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFP 68
Query: 401 ASAPRAYFL 427
P L
Sbjct: 69 FKPPAILML 77
>U39674-4|AAA80414.2| 182|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein22 protein.
Length = 182
Score = 37.1 bits (82), Expect = 0.007
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +2
Query: 326 IDGPAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTLKR 496
I GPA+TPY G F V L +P + P+ F + V P TG+V + R
Sbjct: 35 IAGPADTPYETGVFEVDLTFPDNYPNALPQIKFQTLIWNCA-VEPSTGQVHIENYSR 90
>AF040645-12|AAB94978.2| 78|Caenorhabditis elegans Hypothetical
protein F52C6.12 protein.
Length = 78
Score = 34.7 bits (76), Expect = 0.039
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = +2
Query: 221 ALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGGTF 367
AL + +EL L PP DD A I GP E+PY GG F
Sbjct: 2 ALKRIQKELHDLGRDPPAQCSTGSVGDDLYHWQATIMGPPESPYQGGIF 50
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 34.3 bits (75), Expect = 0.052
Identities = 17/77 (22%), Positives = 35/77 (45%)
Frame = +2
Query: 182 GCAMSNAENVCPQALNSVARELRRLALHPPPGVKLQLRDDDFTDVLALIDGPAETPYAGG 361
G ++ A A+ + ++ +L P G+K +D+ + + G +TP+ GG
Sbjct: 7 GVSVPAAGTASSSAVRRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGG 66
Query: 362 TFRVRLVLGREFPASAP 412
+ +++ FP S P
Sbjct: 67 YYWGKVIFKENFPWSPP 83
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPRR*LHRCAGAHXXXXXXXXXXXHISRATSAGT 390
PPG +++ R SP +P RK+A+P + + A + ATS G+
Sbjct: 307 PPGGDEKKLRAGSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGS 364
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPRR*LHRCAGAHXXXXXXXXXXXHISRATSAGT 390
PPG +++ R SP +P RK+A+P + + A + ATS G+
Sbjct: 307 PPGGDEKKLRAGSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGS 364
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPRR*LHRCAGAHXXXXXXXXXXXHISRATSAGT 390
PPG +++ R SP +P RK+A+P + + A + ATS G+
Sbjct: 307 PPGGDEKKLRAGSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGS 364
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 31.1 bits (67), Expect = 0.49
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPRR*LHRCAGAHXXXXXXXXXXXHISRATSAGT 390
PPG +++ R SP +P RK+A+P + + A + ATS G+
Sbjct: 307 PPGGDEKKLRAGSPSTRKSPSRKSASPTP-SRKGSSAGGAASGTTGASASATSATSGGS 364
>AF045645-2|AAC02609.1| 299|Caenorhabditis elegans Hypothetical
protein K02D7.5 protein.
Length = 299
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 IYIIIAH*FEKF-SIIYIYIILNKGLIDN*KEALQDASEGVSPGQWRMCDVERGECV--- 213
IYIII + F +I+ + + + + +N K L+ + + ++ D+ERG+C+
Sbjct: 178 IYIIIPNGIGMFLAIVQLALFVVLPIRENEKSPLEKLASWFTGRDSKVKDLERGDCIVSS 237
Query: 214 PPGAEQR 234
PP + Q+
Sbjct: 238 PPSSPQK 244
>Z66567-2|CAA91488.1| 1118|Caenorhabditis elegans Hypothetical
protein ZK455.2 protein.
Length = 1118
Score = 27.9 bits (59), Expect = 4.5
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -2
Query: 498 SRFSVFTHTSPVSGDTSGVEHGAFRKYARGA 406
S FSVFT S SGVEH AF Y + A
Sbjct: 102 SNFSVFTMES--CNKYSGVEHAAFLHYLKNA 130
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPR 297
PPGA+ + PG A TP K P+
Sbjct: 253 PPGADGQSGPPGPPGPAGTPGEKGICPK 280
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 214 PPGAEQRGARTASPGVASTPWRKAAAPR 297
PPGA+ + PG A TP K P+
Sbjct: 253 PPGADGQSGPPGPPGPAGTPGEKGICPK 280
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 335 PAETPYAGGTFRVRLVLGREFPASAPRAYFLNAPCSTPDVSPDTGEVCVNTL-KRDWRP 508
P + PY G F+V + ++P P+ F P+V + G+ C+ + +W+P
Sbjct: 41 PDKEPYNKGAFKVGITFPVDYPFKPPKVAF-ETKIYHPNVD-EEGKFCLPIVTAENWKP 97
>AF038604-2|AAB92013.1| 468|Caenorhabditis elegans Hypothetical
protein B0546.3 protein.
Length = 468
Score = 27.5 bits (58), Expect = 6.0
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 31 FVSFPIYIIIAH*FEKFSIIYIYII 105
++ FP + ++H F FS+++IY I
Sbjct: 420 YLYFPRFFQVSHNFSSFSVLFIYCI 444
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = +2
Query: 296 DDDFTDVLALIDGPAETPYAGGTFRVRLVLGREFPASAPRAYF 424
D T A I GP TPY + +++ G +P P F
Sbjct: 35 DMTLTRWTASIIGPPRTPYESRIYNLQIQCGGNYPREPPTVRF 77
>U64843-1|AAF98232.1| 1067|Caenorhabditis elegans Hypothetical
protein K06C4.15 protein.
Length = 1067
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 136 EALQDASEGVSPGQWRMCDVERGECVPPGAEQRGARTASPGVASTPWRKAAAPRR*LHR 312
+ +Q ++GV G+ +E+G P Q+ T PG TP R AP H+
Sbjct: 259 QRIQTTTQGVLQGKREQ--LEQGPTETPLLVQQAPTTTGPGTRITPQRVLNAPALQTHQ 315
>U58760-9|AAK31465.1| 654|Caenorhabditis elegans Dishevelled
related protein 2 protein.
Length = 654
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -1
Query: 340 RGSV--DERQHIGEVIVAELQLYARGWMQRQATQFSRHAVQR 221
RG+V D R IG++IV ++ + ++A Q R AVQR
Sbjct: 396 RGAVALDGRIDIGDMIVGINEISLGNYSNKEAVQLLREAVQR 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,676,887
Number of Sequences: 27780
Number of extensions: 239082
Number of successful extensions: 808
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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