Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J13
         (511 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.45 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.2  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   5.6  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   5.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.8  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.45
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 18  FYFCICFLSDIYYYRSLVREIFNN 89
           F +CI  +  IYYY  +V  + N+
Sbjct: 218 FSYCIPMILIIYYYSQIVSHVVNH 241


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 288 SSATMTSPMCWRSSTDPRKH 347
           SS T TSPM    ST  R H
Sbjct: 325 SSTTTTSPMTSTKSTIVRNH 344


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  IYIILNKGLIDN*KEALQDASEGVSPG 174
           IY +  KGLI +  EA    S   +PG
Sbjct: 511 IYTLKRKGLIKSENEAADFFSGSCAPG 537


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  IYIILNKGLIDN*KEALQDASEGVSPG 174
           IY +  KGLI +  EA    S   +PG
Sbjct: 511 IYTLKRKGLIKSENEAADFFSGSCAPG 537


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 94  IYIILNKGLIDN*KEALQDASEGVSPG 174
           IY +  KGLI +  EA    S   +PG
Sbjct: 511 IYTLKRKGLIKSENEAADFFSGSCAPG 537


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = -3

Query: 275 QGVDATPGDAVLAPRCSAPGGTHSP 201
           Q  D T  D +   R  A GG H P
Sbjct: 117 QQADQTDRDELSHVRALAAGGNHLP 141


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,786
Number of Sequences: 438
Number of extensions: 2934
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)