Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J12
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                128   3e-30
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          105   2e-23
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                99   2e-21
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)              75   4e-14
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     51   5e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               36   0.014
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    36   0.018
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               35   0.042
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              34   0.055
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.097
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.097
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)                  33   0.13 
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              31   0.68 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.2  
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       29   2.8  
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)             28   3.6  
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       27   8.4  

>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score =  128 bits (308), Expect = 3e-30
 Identities = 58/60 (96%), Positives = 59/60 (98%)
 Frame = +2

Query: 245 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 424
           MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1   MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  105 bits (252), Expect = 2e-23
 Identities = 43/101 (42%), Positives = 70/101 (69%)
 Frame = +2

Query: 185 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVT 364
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER++G T+++    F+T   + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225

Query: 365 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 487
           ++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 44/49 (89%), Positives = 47/49 (95%)
 Frame = +2

Query: 101 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 247
           M KEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 32/54 (59%), Positives = 43/54 (79%)
 Frame = +2

Query: 317 IDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 478
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAG 54


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 51.2 bits (117), Expect = 5e-07
 Identities = 29/110 (26%), Positives = 52/110 (47%)
 Frame = +2

Query: 134 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 313
           +I H D+GK+T T  L+   G I         +EA  +     K     D ++ ER+RGI
Sbjct: 15  IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65

Query: 314 TIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
           ++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 66  SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 36.3 bits (80), Expect = 0.014
 Identities = 25/65 (38%), Positives = 31/65 (47%)
 Frame = +2

Query: 125  NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
            N  ++ HVD GKST    L+   G I K +  K                 VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986

Query: 305  RGITI 319
            RGIT+
Sbjct: 1987 RGITV 1991


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 35.9 bits (79), Expect = 0.018
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
 Frame = +2

Query: 110 EKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKFEKEAQEMGKGSFKYAWVL 280
           +K++I N+ VI HVD GKST T  L+ K G I   K    +F    ++            
Sbjct: 14  KKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTA 73

Query: 281 DKLKAERERGITIDIALWKFETGK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 457
             L  E        I   K    + + + +ID+PGH DF   +       D A+++V   
Sbjct: 74  ISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV 133

Query: 458 TG 463
           +G
Sbjct: 134 SG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 308 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 454
           GIT  I  +  + G   +  +D PGH  F      G    D  +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAA 171


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
 Frame = +2

Query: 107 KEKV-HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 277
           KE++ + NI V+GHVDSGK++    L         DK    +      ++G  SF+ A +
Sbjct: 30  KERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-L 88

Query: 278 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 415
            + L   R  G   D+           +T++D PGH   IK +I G
Sbjct: 89  PEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG 122


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 6/120 (5%)
 Frame = +2

Query: 122 INIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLDKL 289
           I + V+G+V+SGKST  G L Y     G  +  +  F    E Q     S  +  +    
Sbjct: 113 IRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGFSC 172

Query: 290 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS--QADCAVLIVAAGTG 463
             E         A    E     +T ID  GH  ++K  I G +    D A+L++A   G
Sbjct: 173 TGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGNAG 232


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 308 GITIDIA--LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
           GIT  I   L K  +G+  +T ID PGH  F      G +  D  VL+VAA  G
Sbjct: 60  GITQHIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDG 112


>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
          Length = 347

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
 Frame = +2

Query: 116 VHINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKY 268
           + + + V+G+VD+GKST     T G L    G   +R    K E E+     +G     +
Sbjct: 228 MEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGF 287

Query: 269 AWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 415
                 +    + G  +D A    E+ K  +T ID  GH  ++K  I G
Sbjct: 288 DNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 284 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 451
           + K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A
Sbjct: 49  RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIA 96


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 365 IIDAPGHRDFIKNMITGTSQADCAVLIV 448
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 444 ISTAQSA*DVPVIMFLMKSLCPGASMMVT*YLPVSNFQRAISMVI 310
           I   QSA DV ++  L   L  G + ++  +LP SNF   +  V+
Sbjct: 331 IPLIQSAKDVRILAVLAMLLTIGLAFLIVPFLPASNFFFRVGFVV 375


>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
          Length = 653

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 214 HRKVREGSPGNG*GFLQIRLGIGQTKGRA*AWYHHRYCSLEVRNRQILCH--HHRRSWTQ 387
           H  V    P  G       L   Q K  +   +HHRYC + V       H  HHRR   +
Sbjct: 58  HVMVNVSQPSGGKLCFSFELSGFQGKNVSSFDHHHRYCIIIVTVSWSFDHHNHHRR---R 114

Query: 388 RFHQEH 405
           R HQ H
Sbjct: 115 RRHQHH 120


>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 134 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKY-AWVLDKLKAERER 307
           ++G VD GK+   G + Y+ G   + T+E  +       KG ++K+    +D  K   E+
Sbjct: 623 IVGTVDIGKTVDIGKVSYEKGWTYEFTVETVDIGKVSDAKGRTYKFIVETVDIGKVSYEK 682

Query: 308 GITIDIALWKFETGK 352
           G T    +   + GK
Sbjct: 683 GRTYKFIVETVDIGK 697


>SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 317 W*YHAHARPLVCPIPKRI*RNPYPF 243
           W +H H+RP+  PIP  + + P  +
Sbjct: 130 WQFHQHSRPMAVPIPYYLYQAPIQY 154


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 361 HHHRRSWTQRFHQEHDH 411
           HHHRR   +R H  H H
Sbjct: 238 HHHRRRRRRRHHHHHHH 254


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,864,675
Number of Sequences: 59808
Number of extensions: 306383
Number of successful extensions: 906
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)