Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J12
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 242 1e-64
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 242 1e-64
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 242 1e-64
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 242 1e-64
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 144 3e-35
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 128 2e-30
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 83 1e-16
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 77 9e-15
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 53 1e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 53 1e-07
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 51 4e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 50 6e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 49 2e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 45 3e-05
At5g13650.2 68418.m01585 elongation factor family protein contai... 40 0.001
At5g13650.1 68418.m01584 elongation factor family protein contai... 40 0.001
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.002
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 36 0.015
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 36 0.015
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 33 0.14
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 33 0.14
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.14
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.24
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 31 0.32
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 31 0.42
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.97
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.97
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.97
At1g23200.1 68414.m02898 pectinesterase family protein contains ... 30 0.97
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.3
At3g60730.1 68416.m06794 pectinesterase family protein contains ... 27 5.2
At3g56520.1 68416.m06285 no apical meristem (NAM) family protein... 27 5.2
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 6.9
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family... 27 6.9
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 27 9.1
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 27 9.1
At1g33890.1 68414.m04201 avirulence-responsive protein, putative... 27 9.1
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 242 bits (592), Expect = 1e-64
Identities = 114/130 (87%), Positives = 119/130 (91%)
Frame = +2
Query: 101 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 280
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 281 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 460
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 461 GEFEAGISKN 490
G FEAGISK+
Sbjct: 121 GGFEAGISKD 130
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 242 bits (592), Expect = 1e-64
Identities = 114/130 (87%), Positives = 119/130 (91%)
Frame = +2
Query: 101 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 280
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 281 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 460
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 461 GEFEAGISKN 490
G FEAGISK+
Sbjct: 121 GGFEAGISKD 130
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 242 bits (592), Expect = 1e-64
Identities = 114/130 (87%), Positives = 119/130 (91%)
Frame = +2
Query: 101 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 280
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 281 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 460
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 461 GEFEAGISKN 490
G FEAGISK+
Sbjct: 121 GGFEAGISKD 130
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 242 bits (592), Expect = 1e-64
Identities = 114/130 (87%), Positives = 119/130 (91%)
Frame = +2
Query: 101 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 280
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 281 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 460
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 461 GEFEAGISKN 490
G FEAGISK+
Sbjct: 121 GGFEAGISKD 130
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 144 bits (349), Expect = 3e-35
Identities = 60/119 (50%), Positives = 89/119 (74%)
Frame = +2
Query: 122 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 301
+N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+ ER
Sbjct: 240 LNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 299
Query: 302 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 478
ERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 300 ERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAG 358
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 128 bits (309), Expect = 2e-30
Identities = 56/126 (44%), Positives = 87/126 (69%)
Frame = +2
Query: 110 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 289
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 290 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 469
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEF
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
Query: 470 EAGISK 487
E G +
Sbjct: 218 ETGYER 223
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 83.0 bits (196), Expect = 1e-16
Identities = 45/122 (36%), Positives = 65/122 (53%)
Frame = +2
Query: 98 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 277
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 278 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 457
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 458 TG 463
G
Sbjct: 177 DG 178
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 76.6 bits (180), Expect = 9e-15
Identities = 44/119 (36%), Positives = 62/119 (52%)
Frame = +2
Query: 107 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 286
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 287 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
E++RGITI A ++ET K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 52.8 bits (121), Expect = 1e-07
Identities = 38/113 (33%), Positives = 55/113 (48%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 305 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
+GITI A Y V IID PGH DF + D A+L++ + G
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 52.8 bits (121), Expect = 1e-07
Identities = 38/113 (33%), Positives = 55/113 (48%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 305 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
+GITI A Y V IID PGH DF + D A+L++ + G
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGG 169
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/113 (31%), Positives = 53/113 (46%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 305 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
R IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 50.4 bits (115), Expect = 6e-07
Identities = 36/117 (30%), Positives = 56/117 (47%)
Frame = +2
Query: 113 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 292
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 293 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
E+ERGITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 48.8 bits (111), Expect = 2e-06
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 305 RGITIDIAL----WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
RGITI + + +E + + +ID PGH DF + + + A+L+V A G
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 44.8 bits (101), Expect = 3e-05
Identities = 43/131 (32%), Positives = 55/131 (41%), Gaps = 9/131 (6%)
Frame = +2
Query: 98 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 277
K EK+ N +I H+D GKST L+ G I K G G +Y
Sbjct: 60 KFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY--- 102
Query: 278 LDKLKAERERGITIDIALWKF---------ETGKYYVTIIDAPGHRDFIKNMITGTSQAD 430
LDKL +RERGIT+ E Y + +ID PGH DF + S
Sbjct: 103 LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLSACQ 160
Query: 431 CAVLIVAAGTG 463
A+L+V A G
Sbjct: 161 GALLVVDAAQG 171
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 39.5 bits (88), Expect = 0.001
Identities = 33/113 (29%), Positives = 49/113 (43%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 305 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
RGITI V IID PGH DF + + D +L+V + G
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 182
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 39.5 bits (88), Expect = 0.001
Identities = 33/113 (29%), Positives = 49/113 (43%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 305 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
RGITI V IID PGH DF + + D +L+V + G
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEG 181
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 292
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 293 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 448
E ++ + +Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.015
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 305 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.015
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 304
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 305 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.7 bits (71), Expect = 0.14
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Frame = +2
Query: 95 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 265
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 266 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 412
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 413 GTSQADCAVLIVAA 454
G + D A+L++AA
Sbjct: 147 GAAIVDGALLLIAA 160
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.7 bits (71), Expect = 0.14
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Frame = +2
Query: 95 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 265
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 266 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 412
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 413 GTSQADCAVLIVAA 454
G + D A+L++AA
Sbjct: 147 GAAIVDGALLLIAA 160
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 359 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 463
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.24
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 356 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 454
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 31.5 bits (68), Expect = 0.32
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +2
Query: 284 KLKAERERGITIDIALWKFET---GKYYVTI-IDAPGHRDFIKNMITGTSQADCAVLIVA 451
K+ A GIT I +K GK + +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 452 AGTG 463
A G
Sbjct: 585 ADDG 588
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.1 bits (67), Expect = 0.42
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 356 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 454
+V+ +D PGH + M+ G + D A+L++AA
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 365 IIDAPGHRDFIKNMITGTSQADCAVLIV 448
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 365 IIDAPGHRDFIKNMITGTSQADCAVLIV 448
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 365 IIDAPGHRDFIKNMITGTSQADCAVLIV 448
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g23200.1 68414.m02898 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 554
Score = 29.9 bits (64), Expect = 0.97
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 475 GFEFTSTSGDNKHGAVSLRRSSD 407
G F +T+G KH AV+LR SSD
Sbjct: 344 GITFENTAGPEKHQAVALRSSSD 366
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 359 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 448
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At3g60730.1 68416.m06794 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 519
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 466 FTSTSGDNKHGAVSLRRSSD 407
F +T+G +KH AV+LR SSD
Sbjct: 303 FENTAGPHKHQAVALRVSSD 322
>At3g56520.1 68416.m06285 no apical meristem (NAM) family protein
similar to nam-like protein 5 (GI:21105738 ) [Petunia x
hybrida]; hypothetical protein SENU5, senescence
up-regulated - Lycopersicon eculentum, PIR:T07182
Length = 175
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 260 RNPYPFPGLPSRTFRWYVCRYH-RICRSSDQLLWT 159
R+P+ PG PS +Y CR S+ LWT
Sbjct: 50 RHPHDLPGYPSEEHWYYFCRKRDNQVTSNSHNLWT 84
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 340 RNRQILCHHHRRSWTQRFH 396
R++ + HHHRRS++Q H
Sbjct: 312 RHKHLPSHHHRRSYSQDHH 330
>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 27.1 bits (57), Expect = 6.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +1
Query: 361 HHHRRSWTQRFHQEH 405
HH R+ W QR H +H
Sbjct: 70 HHRRKKWRQRRHHKH 84
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 247
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +2
Query: 125 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 247
N+V+IG +D+ + H+I + + + +K E+EA E+
Sbjct: 75 NVVLIGELDTEREELPPHMI-RVSEAEIKRAQKVEREASEL 114
>At1g33890.1 68414.m04201 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 334
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 86 NH*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYK 190
NH + K NIV++G +GKS T LI K
Sbjct: 2 NHSEQASAYKAVKNIVLVGRTGNGKSATGNSLIGK 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,667
Number of Sequences: 28952
Number of extensions: 211212
Number of successful extensions: 734
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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