Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   3.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   3.9  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    20   6.8  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   6.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   6.8  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      19   9.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   9.0  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 PGDSASLSAAGSKRSALSASDAE 272
           PG    LS A + + +L ASD +
Sbjct: 92  PGTPGPLSQAPASQQSLDASDPD 114


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 204 PGDSASLSAAGSKRSALSASDAE 272
           PG    LS A + + +L ASD +
Sbjct: 248 PGTPGPLSQAPASQQSLDASDPD 270


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 111 LTSSSWQTVFKPSINL 64
           L SS +  V KP INL
Sbjct: 6   LISSDFHDVIKPLINL 21


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 237 CRPRSATRCRRASISSGLQQDWFQ 166
           CRPR     +  +++    + WFQ
Sbjct: 111 CRPRRIQMAQNLNLTERQIKIWFQ 134


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 237 CRPRSATRCRRASISSGLQQDWFQ 166
           CRPR     +  +++    + WFQ
Sbjct: 131 CRPRRIQMAQNLNLTERQIKIWFQ 154


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 41 GFDRVFTSKLIEGLNTV 91
          G DR+ T +  E LNT+
Sbjct: 5  GADRLMTQRCKEKLNTL 21


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -1

Query: 67  LGSKNTVKTV 38
           +G+KNT++TV
Sbjct: 236 IGTKNTIETV 245


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,504
Number of Sequences: 336
Number of extensions: 709
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)