Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   2.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    23   7.9  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    23   7.9  

>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 291 PGTAKNTRRRKPTKPTACCRPRSATRCRRASISS 190
           P T+K T ++  + P     PRS    R ASISS
Sbjct: 665 PLTSKPTPKKAASLPQFWLSPRSHNTARLASISS 698


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -2

Query: 285 TAKNTRRRKPTKPTACCRPRSATRCRRASISSGLQQDW 172
           T   T     TKP     P   T+   AS    L  DW
Sbjct: 258 TTTETEELNKTKPIWTRNPSEVTKEEYASFYKSLTNDW 295


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 159 KGVETNPVEAPKK-Y*PGDSASLSAAGSKRSALSA 260
           KG+E  P E PKK +  G S+    A  +R +++A
Sbjct: 76  KGIEYPPPEKPKKAHGKGKSSKRPKAVDRRRSITA 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 925,157
Number of Sequences: 5004
Number of extensions: 12053
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)