Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0546 + 4310486-4310703,4310947-4310968                           27   2.3  
06_03_1491 - 30510016-30510021,30510418-30511026,30511119-305114...    26   5.2  
03_01_0370 - 2879469-2879639,2880071-2880172,2881415-2881515,288...    26   6.9  
11_06_0463 + 23879587-23879771,23879783-23881658                       25   9.2  
07_01_0690 + 5221957-5223951                                           25   9.2  

>11_01_0546 + 4310486-4310703,4310947-4310968
          Length = 79

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 213 SASLSAAGSKRSALSASDAECFSLCLGAG 299
           S+S SAA +  S +  SDA+ +S C  AG
Sbjct: 35  SSSSSAAAAAASFVEPSDADTYSTCFEAG 63


>06_03_1491 -
           30510016-30510021,30510418-30511026,30511119-30511484,
           30511660-30511721,30511826-30511937,30512074-30512211,
           30512788-30512811
          Length = 438

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 162 GVETNPVEAPKKY*PGDSASLS--AAGSKRSALSASDAECF 278
           G + NP  A  K  PG S+S S    GS  S LSA  ++ F
Sbjct: 146 GSDANPATAQLKLAPGSSSSGSDQENGSPISVLSAMQSDAF 186


>03_01_0370 -
           2879469-2879639,2880071-2880172,2881415-2881515,
           2881788-2882016
          Length = 200

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 273 TRRRKPTKPTACCRPRSATRCRRASIS 193
           +RR  P+ P    RPRS  RCR  S S
Sbjct: 18  SRRPLPSSPLRGGRPRSPRRCRFGSRS 44


>11_06_0463 + 23879587-23879771,23879783-23881658
          Length = 686

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 8   GCVLRSSLYPNGFDRVFTSKLIEGLNTVCQDDD 106
           G   R   YPN +D+ F+S +   L    +DDD
Sbjct: 368 GYTWRLRYYPNRYDQEFSSSISFALVRTGRDDD 400


>07_01_0690 + 5221957-5223951
          Length = 664

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 174 NPVEAPKKY*PGDSASLSAAGSKRSALSASDAE 272
           NPV++P K      A + A+G   S +S+ D E
Sbjct: 579 NPVDSPSKGGHDHEAEVDASGGAGSMMSSPDKE 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,331,644
Number of Sequences: 37544
Number of extensions: 86874
Number of successful extensions: 303
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)