Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)                 29   1.0  
SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)                    28   1.8  
SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)                      27   3.1  
SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)                 27   3.1  
SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    27   4.1  
SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_50578| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.4  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     25   9.5  

>SB_24452| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1433

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 264 RKPTKPTACCRPRSATRCR 208
           +K TKP+ CC+PRS ++ +
Sbjct: 691 KKSTKPSKCCKPRSRSQSK 709


>SB_38173| Best HMM Match : PAN (HMM E-Value=0.0013)
          Length = 340

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 306 TEARRPGTAKNTRRRKPTKPTACCRPRSATR 214
           T++ +P   K+T+  KPTKPT   +P  +T+
Sbjct: 177 TKSTKP--TKSTKPTKPTKPTKSTKPTKSTK 205


>SB_55199| Best HMM Match : PKD (HMM E-Value=0.75)
          Length = 462

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 282 AKNTRRRKPTKPTACCRPRSATRC 211
           ++N RR    KPT C +  S T C
Sbjct: 85  SQNNRRNSGPKPTGCTKGESGTSC 108


>SB_16617| Best HMM Match : Vicilin_N (HMM E-Value=5.5)
          Length = 547

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = -2

Query: 306 TEARRPGTAKN--TRRRKPTKPTACCRPRSATRCRRASISSGLQQD 175
           T+ R+P        R R+ ++ T   +P+ A R RRA   +  QQD
Sbjct: 421 TKTRKPQDQDKQAARPRQASRKTKTSKPQDARRARRARRKTSKQQD 466


>SB_30326| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1346

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 309  TTEARRPGTAKNTRRRKPTKPTACCRPRSATR 214
            TTEA +P T   T   KP   T     ++AT+
Sbjct: 1200 TTEATKPETETTTEATKPATETTTIATKAATK 1231


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 303 EARRPGTAKNTRRRKPTKPTACCRPRSATRCRRASISSGLQQD 175
           E   P     T R +PT P    RPR  T   ++S+ +GL++D
Sbjct: 511 EVHVPSGTSKTPRYRPTLPDRKPRPRPIT--DQSSVIAGLERD 551


>SB_25960| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 306 TEARRPGTAKNTRRRKPTKPTA 241
           +++ RP  AK  R RKPTKP +
Sbjct: 23  SKSPRPKVAKVKRARKPTKPAS 44


>SB_50578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 108 TSSSWQTVFKPSINLEVK 55
           T SSW+T + P  +LEVK
Sbjct: 184 TESSWRTYYNPKWSLEVK 201


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -2

Query: 306  TEARRPGTAKNTRRRKPTKP-TACCRPRSATRCRRASISSG 187
            T A RP   K     KP +P +A  + ++ TR    S  SG
Sbjct: 1696 TPASRPALQKKAEENKPERPKSAAAKSQANTRPASKSTPSG 1736


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,394,403
Number of Sequences: 59808
Number of extensions: 105703
Number of successful extensions: 287
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)