Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl c...    25   0.85 
AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    23   2.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           23   3.4  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    22   6.0  
AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription fact...    21   7.9  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    21   7.9  

>AF017062-1|AAC47144.2|  649|Anopheles gambiae soluble guanylyl
           cyclase beta subunit protein.
          Length = 649

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 117 VVLTSSSWQTVFKPSINLEVKTRSKPLGYRELRS 16
           +VL S  ++  +K + NLE+ T      YR+L S
Sbjct: 431 LVLLSEKFEAEYKLTTNLEILTDRLQQTYRDLES 464


>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 267 RRKPTKPTACCRPRSATRCRRAS 199
           +RK T P A   P S +R R A+
Sbjct: 556 KRKATSPPAVATPPSTSRARTAT 578


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 303  EARRPGTAKNTRRRKPTKPTACCRPRSATR 214
            EA R    +N RR +PT P     PR A R
Sbjct: 1117 EANRAYRQRN-RRSQPTPPAPPPTPREAAR 1145


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   EGCVLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDV 109
           +G VL  +L+   +D V    ++EG   +   DD+
Sbjct: 607 QGSVLGPTLWNLMYDGVLRVAMVEGARIIGYADDI 641


>AF269156-1|AAF91401.1|   52|Anopheles gambiae transcription factor
           zen protein.
          Length = 52

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -2

Query: 237 CRPRSATRCRRASISSGLQQDWFQ 166
           CRPR     R+ +++    + WFQ
Sbjct: 26  CRPRRIELTRKLALTERQIKIWFQ 49


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 5   EGCVLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDV 109
           +G +L   L+  G+D V   +L EG   V   DD+
Sbjct: 632 QGSMLGPRLWNVGYDGVLRLELPEGAQAVGFVDDL 666


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,689
Number of Sequences: 2352
Number of extensions: 3266
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 19884282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)