Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J11
(310 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open read... 29 2.1
AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein. 29 2.1
AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens ... 29 2.1
X06256-1|CAA29601.1| 1049|Homo sapiens protein ( Human mRNA for ... 29 2.8
M13918-1|AAA52467.1| 1034|Homo sapiens fibronectin receptor alph... 29 2.8
BC008786-1|AAH08786.1| 1049|Homo sapiens integrin, alpha 5 (fibr... 29 2.8
AK055188-1|BAB70869.1| 314|Homo sapiens protein ( Homo sapiens ... 29 2.8
AJ583817-1|CAE47744.2| 1124|Homo sapiens ubiquitin specific prot... 29 2.8
AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens ... 28 4.8
Z46940-1|CAA87065.1| 51|Homo sapiens protamine 1 protein. 28 6.4
Y00443-1|CAA68499.1| 51|Homo sapiens protein ( Human testis sp... 28 6.4
U15422-1|AAC50486.1| 51|Homo sapiens protamine 1 protein. 28 6.4
S68144-1|AAB29321.2| 51|Homo sapiens protamine P1 protein. 28 6.4
M60331-1|AAA63249.1| 51|Homo sapiens protamine 1 protein. 28 6.4
M29706-1|AAA60191.1| 51|Homo sapiens protein ( Human P1 protam... 28 6.4
BT006746-1|AAP35392.1| 51|Homo sapiens protamine 1 protein. 28 6.4
BC003673-1|AAH03673.1| 51|Homo sapiens PRM1 protein protein. 28 6.4
AY651260-1|AAX35688.1| 51|Homo sapiens testis specific protami... 28 6.4
AF215707-1|AAF34620.1| 51|Homo sapiens protamine 1 protein. 28 6.4
AB281136-1|BAF36637.1| 51|Homo sapiens protamine 1 protein. 28 6.4
>BC126459-1|AAI26460.1| 257|Homo sapiens chromosome 10 open reading
frame 95 protein.
Length = 257
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = -2
Query: 306 TEARRPGTAKNTRRRK----PTKPTACCRPRS 223
T RRP A RRR PT P CC P+S
Sbjct: 50 TAGRRPNRASGRRRRSCSPAPTWPPLCCYPQS 81
>AL121928-10|CAI12523.1| 257|Homo sapiens novel protein protein.
Length = 257
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = -2
Query: 306 TEARRPGTAKNTRRRK----PTKPTACCRPRS 223
T RRP A RRR PT P CC P+S
Sbjct: 50 TAGRRPNRASGRRRRSCSPAPTWPPLCCYPQS 81
>AK024342-1|BAB14892.1| 257|Homo sapiens protein ( Homo sapiens
cDNA FLJ14280 fis, clone PLACE1005584, weakly similar to
TRANS-ACTING TRANSCRIPTIONAL PROTEIN ICP0. ).
Length = 257
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
Frame = -2
Query: 306 TEARRPGTAKNTRRRK----PTKPTACCRPRS 223
T RRP A RRR PT P CC P+S
Sbjct: 50 TAGRRPNRASGRRRRSCSPAPTWPPLCCYPQS 81
>X06256-1|CAA29601.1| 1049|Homo sapiens protein ( Human mRNA for
integrin alpha 5 subunit. ).
Length = 1049
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 159 KGVETNPVEAPKKY*PGDSASLSAAGSKRSALSASDAECFSLCLGAGPL 305
KG+E +P + ++ S S+A S L +AECF L GPL
Sbjct: 878 KGLELDPEGSLHHQQKREAPSRSSASSGPQILKCPEAECFRLRCELGPL 926
>M13918-1|AAA52467.1| 1034|Homo sapiens fibronectin receptor
alpha-subunit precursor protein.
Length = 1034
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 159 KGVETNPVEAPKKY*PGDSASLSAAGSKRSALSASDAECFSLCLGAGPL 305
KG+E +P + ++ S S+A S L +AECF L GPL
Sbjct: 863 KGLELDPEGSLHHQQKREAPSRSSASSGPQILKCPEAECFRLRCELGPL 911
>BC008786-1|AAH08786.1| 1049|Homo sapiens integrin, alpha 5
(fibronectin receptor, alpha polypeptide) protein.
Length = 1049
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 159 KGVETNPVEAPKKY*PGDSASLSAAGSKRSALSASDAECFSLCLGAGPL 305
KG+E +P + ++ S S+A S L +AECF L GPL
Sbjct: 878 KGLELDPEGSLHHQQKREAPSRSSASSGPQILKCPEAECFRLRCELGPL 926
>AK055188-1|BAB70869.1| 314|Homo sapiens protein ( Homo sapiens
cDNA FLJ30626 fis, clone CTONG2001911, weakly similar to
UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 4 (EC 3.1.2.15).
).
Length = 314
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 14 VLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDV 109
V+ LYP+GF R F + E LNT+ + D+V
Sbjct: 13 VILVELYPSGFQRSFFDE--EDLNTIAEGDNV 42
>AJ583817-1|CAE47744.2| 1124|Homo sapiens ubiquitin specific
proteinase 43 protein.
Length = 1124
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 14 VLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDV 109
V+ LYP+GF R F + E LNT+ + D+V
Sbjct: 325 VILVELYPSGFQRSFFDE--EDLNTIAEGDNV 354
>AK127046-1|BAC86802.1| 1225|Homo sapiens protein ( Homo sapiens cDNA
FLJ45103 fis, clone BRAWH3032571, moderately similar to
Chromodomain helicase-DNA-binding protein 4. ).
Length = 1225
Score = 28.3 bits (60), Expect = 4.8
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTACCRPRSATRCRRASISS 190
R P + RRR+P P + CR R RR S +S
Sbjct: 1188 REPERSGQRRRRRPRPPRSSCRERRCFLRRRRSWTS 1223
>Z46940-1|CAA87065.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>Y00443-1|CAA68499.1| 51|Homo sapiens protein ( Human testis
specific mRNA for protamine 1 (P1). ).
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>U15422-1|AAC50486.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>S68144-1|AAB29321.2| 51|Homo sapiens protamine P1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>M60331-1|AAA63249.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>M29706-1|AAA60191.1| 51|Homo sapiens protein ( Human P1 protamine
(PRM1) gene, complete cds. ).
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>BT006746-1|AAP35392.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>BC003673-1|AAH03673.1| 51|Homo sapiens PRM1 protein protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>AY651260-1|AAX35688.1| 51|Homo sapiens testis specific protamine
1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>AF215707-1|AAF34620.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
>AB281136-1|BAF36637.1| 51|Homo sapiens protamine 1 protein.
Length = 51
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = -2
Query: 297 RRPGTAKNTRRRKPTKPTA--CCRPRSATRCRR 205
+R + + RR T+ A CCRPR RCRR
Sbjct: 18 QRQRSRRRRRRSCQTRRRAMRCCRPRYRPRCRR 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,165,514
Number of Sequences: 237096
Number of extensions: 485773
Number of successful extensions: 1272
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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