Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical pr...    31   0.22 
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr...    28   1.2  
AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical ...    28   1.2  
Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical pr...    26   6.2  
Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical pr...    26   6.2  
X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.        26   6.2  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    26   6.2  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    26   6.2  

>Z83220-2|CAB05701.2|  905|Caenorhabditis elegans Hypothetical
           protein C34B7.2 protein.
          Length = 905

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 291 PGTAKNTRRRKPTKPTACCRPRSATRCRRASISSGLQ 181
           PG    T ++ PTK  +   PR+ +R +R+ +S+GLQ
Sbjct: 762 PGNVTTTLQKSPTKREST-PPRNTSRAKRSLLSTGLQ 797


>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
           protein W10C6.1 protein.
          Length = 1461

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 11  CVLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDVNT 115
           C L   L PNG   V T  L+   ++ C+D  +NT
Sbjct: 348 CHLSVELDPNGEGFVHTQDLLHAFHSQCEDWSINT 382


>AF106576-1|AAC78177.2|  664|Caenorhabditis elegans Hypothetical
           protein W07E6.1 protein.
          Length = 664

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 23  SSLYPNGFDRVFTSKLIEGLNTVCQDDDVNTT 118
           S + PNGFDR+       G   + +D  V T+
Sbjct: 369 SKIRPNGFDRILLDAPCSGTGVIWKDQSVKTS 400


>Z68221-5|CAJ30235.1|  416|Caenorhabditis elegans Hypothetical
           protein W09C2.1b protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 ASLSAAGSKRSALSASDAECFSLCLGAGPLW 308
           A+ S+ G+  S  S  D EC +  +   PLW
Sbjct: 198 ANRSSGGANNSQFSTEDRECVNCGVHNTPLW 228


>Z68221-4|CAJ30234.1|  488|Caenorhabditis elegans Hypothetical
           protein W09C2.1a protein.
          Length = 488

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 ASLSAAGSKRSALSASDAECFSLCLGAGPLW 308
           A+ S+ G+  S  S  D EC +  +   PLW
Sbjct: 270 ANRSSGGANNSQFSTEDRECVNCGVHNTPLW 300


>X57834-1|CAA40967.1|  416|Caenorhabditis elegans elt-1 protein.
          Length = 416

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 ASLSAAGSKRSALSASDAECFSLCLGAGPLW 308
           A+ S+ G+  S  S  D EC +  +   PLW
Sbjct: 198 ANRSSGGANNSQFSTEDRECVNCGVHNTPLW 228


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -2

Query: 309 TTEARRPGTAKNTRRRKPTKPTACCRPRSATRCRRASISSGLQQDW 172
           ++ ARRP TAK      PT   A     +A     A     L   W
Sbjct: 180 SSSARRPATAKRDTLAAPTSTAAAAAAATAGGTPAAGAEEQLPDGW 225


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/46 (30%), Positives = 17/46 (36%)
 Frame = -2

Query: 309 TTEARRPGTAKNTRRRKPTKPTACCRPRSATRCRRASISSGLQQDW 172
           ++ ARRP TAK      PT   A     +A     A     L   W
Sbjct: 180 SSSARRPATAKRDTLAAPTSTAAAAAAATAGGTPAAGAEEQLPDGW 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,246,034
Number of Sequences: 27780
Number of extensions: 70406
Number of successful extensions: 166
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)