Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J11
(310 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 23 1.1
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 23 1.1
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 4.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.8
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.8
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.8
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.6 bits (46), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 117 VVLTSSSWQTVFKPSINLEVKTRSKPLGYREL 22
+VL S ++ +K + NLE+ T YREL
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYREL 373
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 22.6 bits (46), Expect = 1.1
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -2
Query: 117 VVLTSSSWQTVFKPSINLEVKTRSKPLGYREL 22
+VL S ++ +K + NLE+ T YREL
Sbjct: 342 LVLMSEQFEADYKLTRNLELLTDKLQQTYREL 373
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 20.6 bits (41), Expect = 4.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -2
Query: 111 LTSSSWQTVFKPSINLEVKT 52
LT WQ + K S+N +KT
Sbjct: 285 LTIQIWQQIVKFSLNSILKT 304
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 311 RPGKKITKKTILGGNRRAK 329
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 379 RPGKKITKKTILGGNRRAK 397
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 7.8
Identities = 7/19 (36%), Positives = 14/19 (73%)
Frame = -3
Query: 302 RPGAQAQRKTLGVGSRQSR 246
RPG + +KT+ G+R+++
Sbjct: 379 RPGKKITKKTILGGNRRAK 397
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,458
Number of Sequences: 438
Number of extensions: 844
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6471036
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
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