Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_J11
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p...    28   1.1  
At5g02060.1 68418.m00127 integral membrane protein, putative con...    27   3.4  
At1g24010.1 68414.m03031 expressed protein                             26   5.9  
At4g23360.1 68417.m03369 expressed protein predicted proteins, A...    25   7.8  
At1g70620.2 68414.m08137 cyclin-related contains weak similarity...    25   7.8  
At1g70620.1 68414.m08138 cyclin-related contains weak similarity...    25   7.8  
At1g12930.1 68414.m01501 importin-related similar to late gestat...    25   7.8  
At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to R...    25   7.8  

>At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase,
          putative similar to dihydrolipoamide
          S-acetyltransferase (LTA2) [Arabidopsis thaliana]
          GI:5881963; contains Pfam profiles PF00198: 2-oxo acid
          dehydrogenases acyltransferase (catalytic domain),
          PF00364: Biotin-requiring enzyme, PF02817: e3 binding
          domain
          Length = 465

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 93 QTVFKPSINLEVKTRSKPLGYR 28
          QT F PS++L  KTRS   G+R
Sbjct: 6  QTPFLPSVSLPTKTRSSVTGFR 27


>At5g02060.1 68418.m00127 integral membrane protein, putative
           contains 4 transmembrane domains; similar to
           hypothetical proteins - Arabidopsis thaliana; contains
           Pfam PF04535 : Domain of unknown function (DUF588);
           similar to putative ethylene responsive element binding
           protein (GI:22135858) [Arabidopsis thaliana]
          Length = 152

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = -2

Query: 255 TKPTACCRPRSATRCRRASISSGLQ-QDWF 169
           TK T  CR + A  C R  IS GL   +WF
Sbjct: 109 TKDTEFCRQQPALSCDRFQISVGLSFFNWF 138


>At1g24010.1 68414.m03031 expressed protein
          Length = 141

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 102 SSWQTVFKPSINLEVKTRSKPLGYRELRST 13
           S W   FK +I  ++ T   P GY++L  T
Sbjct: 59  SEWYKSFKGTITPDMATWQNPDGYKKLEGT 88


>At4g23360.1 68417.m03369 expressed protein predicted proteins,
           Arabidopsis thaliana contains Pfam profile PF03080:
           Arabidopsis proteins of unknown function; expression
           supported by MPSS
          Length = 873

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 8   GCVLRSSLYPNGFDRVFTSKLIEGLNTVCQD 100
           G  +  SLY   + R++ S  + G NT C D
Sbjct: 210 GWKVNPSLYHGDYARLYASWTLHGSNTGCND 240


>At1g70620.2 68414.m08137 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 884

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 297 RRPGTAKNTRRRKPTKPTACCRPRSATRCRRASIS 193
           R   ++K+ RRR PT   +    +  +R RR S+S
Sbjct: 807 RAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVS 841


>At1g70620.1 68414.m08138 cyclin-related contains weak similarity to
           Swiss-Prot:P35662 cylicin I (Multiple-band polypeptide
           I) [Bos taurus]
          Length = 897

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 297 RRPGTAKNTRRRKPTKPTACCRPRSATRCRRASIS 193
           R   ++K+ RRR PT   +    +  +R RR S+S
Sbjct: 777 RAENSSKDKRRRSPTSNESSDDSKRKSRSRRRSVS 811


>At1g12930.1 68414.m01501 importin-related similar to late gestation
           lung 2 protein (GI:7274209) {Rattus norvegicus}; similar
           to Ran binding protein 13 (importin 13)) (GI:8133102)
           {Homo sapiens}; contains weak hit to  Pfam PF03810:
           Importin-beta N-terminal domain
          Length = 1005

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 2   HEGCVLRSSLYPNGFDRVFTSKLIEGLNTV 91
           H G  L +  Y +GF  V  S +IE +N++
Sbjct: 823 HRGAALAAMSYLSGFLEVSLSSMIETVNSI 852


>At1g05460.1 68414.m00555 RNA helicase SDE3 (SDE3) identical to RNA
           helicase SDE3 [Arabidopsis thaliana] GI:13811296
          Length = 1002

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 5   EGCVLRSSLYPNGFDRVFTSKLIEGLNTVCQDDDV 109
           +GC  R    P+ F+R+  SK+IE +  +  +D V
Sbjct: 670 QGCDEREGNNPSWFNRIEISKVIETIKRLTANDCV 704


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,968,471
Number of Sequences: 28952
Number of extensions: 66034
Number of successful extensions: 184
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)