Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J09
(561 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein S19|Schizosac... 125 4e-30
SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein S19|Sch... 124 9e-30
SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein L10a... 67 1e-12
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 67 2e-12
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 34 0.016
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 27 1.9
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 4.4
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 26 4.4
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 25 7.6
>SPBC21C3.13 |rps1901|rps19-1|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 144
Score = 125 bits (302), Expect = 4e-30
Identities = 57/108 (52%), Positives = 73/108 (67%)
Frame = +1
Query: 235 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 414
M V+VKDV+ K + AA LK+ GK+ P +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQKFITAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 415 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
RHIY+R VGV + K++GG G+ PSH SGS+ RK +Q+LE
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLE 108
>SPBC649.02 |rps1902|rps19-2, rps19|40S ribosomal protein
S19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 124 bits (299), Expect = 9e-30
Identities = 56/108 (51%), Positives = 73/108 (67%)
Frame = +1
Query: 235 MRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAI 414
M V+VKDV+ + + AA LK+ GK+ P +D+VKT KELAPYDPDW+YVR AAI
Sbjct: 1 MAGVSVKDVDAQQFINAYAAFLKRSGKMTTPQWIDIVKTGTHKELAPYDPDWYYVRAAAI 60
Query: 415 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
RHIY+R VGV + K++GG G+ PSH SGS+ RK +Q+LE
Sbjct: 61 ARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLE 108
>SPCC1183.08c |rpl101|rpl1-1, rpl10a-1|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 3|||Manual
Length = 216
Score = 67.3 bits (157), Expect = 1e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKF
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHADDLYGKITEVKSTIKF 156
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 66.9 bits (156), Expect = 2e-12
Identities = 32/45 (71%), Positives = 36/45 (80%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SE LIKQIPRLLGPGL+KAGKFP +SH + + KI EVK TIKF
Sbjct: 112 SEVLIKQIPRLLGPGLSKAGKFPSPVSHSDDLYGKIIEVKSTIKF 156
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 33.9 bits (74), Expect = 0.016
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +1
Query: 175 SREPSNFCLVPNSARGTQGKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDH 333
S +PSN C +SA ++ +S T+K T A+ KKI + +PDH
Sbjct: 103 SAQPSNNC---SSATDSENDFQSFTIKSSTTYHTTPTTASENKKIESITIPDH 152
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 1.9
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 103 VSIRLASSLVSYPTRNP*HRKLMKSREPSNFCLVPNSARGTQGK-MRSVTVKDVEQDKI 276
VS R SLVSY R+ + KS E SNF S + G+ +KD+E + I
Sbjct: 34 VSNRSTPSLVSYGERSRFLGEAAKSAEASNFRNTVGSLKRLAGRTYDDPEIKDIESNFI 92
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 457 QS*LQQESGYRCDAV*QHSVHKTNQGHR 374
QS +++SGY D V S H+T + HR
Sbjct: 90 QSFQREDSGYNDDVVTNSSSHRTPRHHR 117
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.8 bits (54), Expect = 4.4
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -2
Query: 284 VLTILSCSTSFTVTERILPCVPRAEFGTRQKFDGSLDFINFLC 156
VLT+LS S T+ C + DG LDFIN +C
Sbjct: 586 VLTVLSSSVPLFQTDVSGAC--ELVHLASEGLDGELDFINVIC 626
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 229 GKMRSVTVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTA 354
G+ + V D+E +K+++ HL + +K+ +D++ TA
Sbjct: 224 GEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVLVTA 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,344
Number of Sequences: 5004
Number of extensions: 43568
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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