Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J09
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220... 137 5e-33
08_02_1573 + 27956351-27956409,27956411-27956630,27957000-279571... 58 6e-09
08_02_1568 + 27922338-27922342,27922839-27923058,27923369-279235... 58 6e-09
02_02_0678 + 12868735-12868739,12869576-12869795,12870280-128704... 58 6e-09
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 54 8e-08
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 3.4
12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693 27 7.7
11_01_0645 + 5185341-5185568,5185773-5185823 27 7.7
01_05_0390 - 21720118-21720573,21720667-21721296,21721427-217217... 27 7.7
01_05_0389 + 21716056-21716191,21716275-21716597,21716889-217175... 27 7.7
>03_04_0129 +
17520753-17520842,17521651-17521741,17521887-17522070,
17522149-17522224
Length = 146
Score = 137 bits (332), Expect = 5e-33
Identities = 60/104 (57%), Positives = 79/104 (75%)
Frame = +1
Query: 247 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 426
TVKDV + VK +AHLK+ GK+++P+ +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8 TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67
Query: 427 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
Y+R +GV KI+GGR+RNG P HFC+SSG+I+R LQ L+
Sbjct: 68 YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQ 111
>08_02_1573 +
27956351-27956409,27956411-27956630,27957000-27957150,
27957602-27957807,27957967-27958020
Length = 229
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KF
Sbjct: 130 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKF 169
>08_02_1568 +
27922338-27922342,27922839-27923058,27923369-27923519,
27923874-27924079,27924211-27924264
Length = 211
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KF
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKF 151
>02_02_0678 +
12868735-12868739,12869576-12869795,12870280-12870430,
12870853-12871058,12871166-12871219
Length = 211
Score = 57.6 bits (133), Expect = 6e-09
Identities = 27/45 (60%), Positives = 35/45 (77%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SE++IKQIPRLLGPG KFP L++HQES+ K++E K T+KF
Sbjct: 112 SEAIIKQIPRLLGPG-----KFPTLVTHQESLESKVNETKATVKF 151
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 54.0 bits (124), Expect = 8e-08
Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 22/67 (32%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKA----------------------GKFPGLLSHQESMTQKIDE 173
SE++IKQIPRLLGPGLNKA GKFP L++HQES+ K++E
Sbjct: 112 SEAIIKQIPRLLGPGLNKAGKILLVYGRSILKSSYIIVSKRGKFPTLVTHQESLESKVNE 171
Query: 174 VKGTIKF 194
K T+KF
Sbjct: 172 TKATVKF 178
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 72 IKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFLPRAEF 212
++ + +LG N K+ LL + + KIDE++ ++K +EF
Sbjct: 289 VENLQHMLGCLKNHVEKYAALLDQHDDLHDKIDELEASLKEGKTSEF 335
>12_01_0269 + 1965126-1965169,1965398-1966064,1966181-1966693
Length = 407
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 83 SASPWSWSQ*GWQVPWSLIP 142
SA WSW GW VP + P
Sbjct: 273 SAFAWSWGPLGWLVPSEIFP 292
>11_01_0645 + 5185341-5185568,5185773-5185823
Length = 92
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 424 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 540
++ +SP + + + GR+R G P R +G IA +
Sbjct: 18 VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56
>01_05_0390 -
21720118-21720573,21720667-21721296,21721427-21721749,
21721844-21721973
Length = 512
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 83 SASPWSWSQ*GWQVPWSLIP 142
SA WSW GW VP + P
Sbjct: 397 SAFAWSWGPLGWLVPSEIFP 416
>01_05_0389 +
21716056-21716191,21716275-21716597,21716889-21717518,
21717602-21718054
Length = 513
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 83 SASPWSWSQ*GWQVPWSLIP 142
SA WSW GW VP + P
Sbjct: 399 SAFAWSWGPLGWLVPSEIFP 418
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,365,614
Number of Sequences: 37544
Number of extensions: 296380
Number of successful extensions: 767
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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