Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J09
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4) 74 9e-14
SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30) 67 1e-11
SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_7238| Best HMM Match : rve (HMM E-Value=0.0017) 31 0.85
SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_6677| Best HMM Match : Ribosomal_L1 (HMM E-Value=0.4)
Length = 81
Score = 73.7 bits (173), Expect = 9e-14
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
S+SLIKQIPR+LGPGLNKAGKFP ++H E+M QKI++V+ TIKF
Sbjct: 28 SDSLIKQIPRILGPGLNKAGKFPTPINHNENMVQKIEDVRSTIKF 72
>SB_54531| Best HMM Match : Ribosomal_S19e (HMM E-Value=5e-30)
Length = 92
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/83 (44%), Positives = 45/83 (54%)
Frame = +1
Query: 310 GKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHIYIRSPVGVKTVTKIFGGRKRN 489
G +K+PD +DLVKT +FKELAPYDPDW+Y+R GRK
Sbjct: 3 GNLKIPDWVDLVKTGKFKELAPYDPDWYYIR-----------------------AGRKNR 39
Query: 490 GVTPSHFCRSSGSIARKALQALE 558
G PSHF S S+AR L+ LE
Sbjct: 40 GSAPSHFEVGSASVARSVLKGLE 62
>SB_31396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 675
Score = 30.7 bits (66), Expect = 0.85
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +1
Query: 94 LVLVSIRLASSLVSYPTRNP-----*HR-KLMKSREPSNFCLVPNSARGTQGKMRSVTVK 255
++ V R+ ++LVSY TR+P HR L+ +R + +A + + + VK
Sbjct: 274 IIRVGGRVDAALVSYDTRHPILLPSDHRGALLITRHVHKHGHLGVAATTAKIRAKYWIVK 333
Query: 256 DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRC 405
+ KIVK K++ M + R LAPY P +F+ C
Sbjct: 334 GNKLSKIVKKECVFCKRLAHQTETQIMSALPQLR---LAPYTPPFFHTSC 380
>SB_7238| Best HMM Match : rve (HMM E-Value=0.0017)
Length = 367
Score = 30.7 bits (66), Expect = 0.85
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +1
Query: 94 LVLVSIRLASSLVSYPTRNP-----*HR-KLMKSREPSNFCLVPNSARGTQGKMRSVTVK 255
++ V R+ ++LVSY TR+P HR L+ +R + +A + + + VK
Sbjct: 65 IIRVGGRVDAALVSYDTRHPILLPSDHRGALLITRHVHKHGHLGVAATTAKIRAKYWIVK 124
Query: 256 DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRC 405
+ KIVK K++ M + R LAPY P +F+ C
Sbjct: 125 GNKLSKIVKKECVFCKRLAHQTETQIMSALPQLR---LAPYTPPFFHTSC 171
>SB_47328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1634
Score = 29.9 bits (64), Expect = 1.5
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Frame = +1
Query: 94 LVLVSIRLASSLVSYPTRNP-----*HR-KLMKSREPSNFCLVPNSARGTQGKMRSVTVK 255
++ V R+ ++LVSY TR+P HR L+ +R + +A + + + VK
Sbjct: 1226 IIRVGGRVDAALVSYDTRHPILLPSDHRGALLITRHVHKHGHLGVAATTAKIRGKYWIVK 1285
Query: 256 DVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRC 405
+ KIVK K++ M + R LAPY P +F+ C
Sbjct: 1286 GNKLSKIVKKECVFCKRLSHQTETQIMSALPQLR---LAPYTPPFFHTSC 1332
>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2051
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = -1
Query: 402 AYIKPIRVIGSQFLETSCLYQVHMIWNLHFADLFQVSGYSFDD 274
AY+ ++G +++ET LY +IW+L + Q+S SFD+
Sbjct: 1580 AYVPLCGIMGGKYMET-VLYNHDLIWSLCCSHDVQLSHPSFDE 1621
>SB_8022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 386
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +1
Query: 247 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMD-LVKTARFKELAPYDPDWFYVRCAAILRH 423
TV V K KT ++VP ++ L T R E+ + W V+C
Sbjct: 221 TVNKVTGRKYTKTFVIMSGSNRPMRVPHSLEPLTLTNRVAEVT-FCRSWNAVKCTKYCAL 279
Query: 424 IYIRSPVGVKTVTKIFG 474
IY+ S + + V K+ G
Sbjct: 280 IYLHSRLDTQPVNKVIG 296
>SB_18760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1569
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 160 RKLMKSR-EPSNFCLVPNSARGTQGKMRSVTVKDVEQDKIVKTVAAHLK 303
R + K++ EPS+ VP S R T+GK ++V V++ ++ + + K
Sbjct: 1521 RGMKKAKVEPSSAEEVPKSTRKTRGKKKAVAVEEPVTTRVTRNRTSRRK 1569
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,645,802
Number of Sequences: 59808
Number of extensions: 333059
Number of successful extensions: 770
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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