Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_J09
(561 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S ... 132 2e-31
At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) simi... 131 3e-31
At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S ... 130 5e-31
At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC) 77 6e-15
At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA) si... 77 6e-15
At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB) 77 8e-15
At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB) 77 8e-15
At5g45800.1 68418.m05632 leucine-rich repeat transmembrane prote... 28 3.7
At4g23540.1 68417.m03392 expressed protein probable membrane pro... 27 6.5
At3g17280.1 68416.m02209 F-box family protein contains Pfam PF00... 27 6.5
At1g51990.2 68414.m05865 O-methyltransferase family 2 protein si... 27 6.5
At1g51990.1 68414.m05864 O-methyltransferase family 2 protein si... 27 6.5
At1g20060.1 68414.m02511 kinesin motor protein-related 27 6.5
>At5g15520.1 68418.m01817 40S ribosomal protein S19 (RPS19B) 40S
RIBOSOMAL PROTEIN S19 - Oryza sativa,
SWISSPROT:RS19_ORYSA
Length = 143
Score = 132 bits (318), Expect = 2e-31
Identities = 59/104 (56%), Positives = 74/104 (71%)
Frame = +1
Query: 247 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 426
TVKDV VK A+HLK+ GK+++P D+VKT R KELAPYDPDW+Y+R A++ R I
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARKI 65
Query: 427 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLE 109
>At3g02080.1 68416.m00173 40S ribosomal protein S19 (RPS19A) similar
to 40S ribosomal protein S19 GB:P40978 [Oryza sativa]
Length = 143
Score = 131 bits (317), Expect = 3e-31
Identities = 57/104 (54%), Positives = 74/104 (71%)
Frame = +1
Query: 247 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 426
TVKDV VK A+HLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 427 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
Y+R +GV +I+GG KRNG P HFC+SSG IAR LQ LE
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLE 109
>At5g61170.1 68418.m07674 40S ribosomal protein S19 (RPS19C) 40S
ribsomal protein S19, Oryza sativa, SWISSPROT:RS19_ORYSA
Length = 143
Score = 130 bits (315), Expect = 5e-31
Identities = 56/104 (53%), Positives = 75/104 (72%)
Frame = +1
Query: 247 TVKDVEQDKIVKTVAAHLKKIGKVKVPDHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 426
TVKDV + VK AAHLK+ GK+++P D+VKT + KELAPYDPDW+Y+R A++ R +
Sbjct: 6 TVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARKV 65
Query: 427 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQALE 558
Y+R +GV +I+GG KRNG P HFC+SSG +AR LQ L+
Sbjct: 66 YLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQ 109
>At5g22440.1 68418.m02617 60S ribosomal protein L10A (RPL10aC)
Length = 217
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KF
Sbjct: 113 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKF 157
>At1g08360.1 68414.m00925 60S ribosomal protein L10A (RPL10aA)
similar to 60S ribosomal protein L10A GB:AAC73045
GI:3860277 from [Arabidopsis thaliana]
Length = 216
Score = 77.4 bits (182), Expect = 6e-15
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KF
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLESKVNETKATVKF 156
>At2g27530.2 68415.m03331 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 77.0 bits (181), Expect = 8e-15
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KF
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKF 156
>At2g27530.1 68415.m03330 60S ribosomal protein L10A (RPL10aB)
Length = 216
Score = 77.0 bits (181), Expect = 8e-15
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = +3
Query: 60 SESLIKQIPRLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKF 194
SES+IKQIPRLLGPGLNKAGKFP L+SHQES+ K++E K T+KF
Sbjct: 112 SESVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKATVKF 156
>At5g45800.1 68418.m05632 leucine-rich repeat transmembrane protein
kinase, putative
Length = 666
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 292 AHLKKIGKVKVPDHMDLVK-TARFKELAPYDPDWFYVRCAAILRHIYIRS 438
+H V P+ D + T F+ ++ ++ WF C+A++ H+ + S
Sbjct: 15 SHSDSSSTVSCPNGTDFHQLTTVFRYVSGFNSSWFSSNCSAVITHVVLPS 64
>At4g23540.1 68417.m03392 expressed protein probable membrane
protein YPL012w, Saccharomyces cerevisiae, PIR2:S59681
Length = 675
Score = 27.5 bits (58), Expect = 6.5
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Frame = +3
Query: 108 NKAGKFPGLLSHQESMTQKIDEVKGTIKFLPRAEFGTRNTRQDAFRYSEGC*TRQNRQNC 287
N++GK ES T ID +G K R +QD ++ T Q
Sbjct: 569 NRSGKSKDKEETNESQTTSIDPSRGPRKRNYREASSETTAKQDGNKFKRQKRTYQQHTPA 628
Query: 288 SRSLEKDR---QSEGSRSYGLGKDSS 356
S + + R Q G+RS+G +++S
Sbjct: 629 S-DINQSRTGPQRPGNRSFGKQREAS 653
>At3g17280.1 68416.m02209 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
protein interaction domain
Length = 386
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 276 DFVLFNILHCNGTHLALCSSCRI 208
D +F I HCNG L +CR+
Sbjct: 94 DLEIFRIHHCNGLFLCATMNCRL 116
>At1g51990.2 68414.m05865 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 285 CSRSLEKDRQSEGSRSYGLGK 347
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g51990.1 68414.m05864 O-methyltransferase family 2 protein
similar to caffeic acid O-methyltransferase GI:5031492
from [Ocimum basilicum], [SP|Q00763] [Populus
tremuloides]
Length = 363
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 285 CSRSLEKDRQSEGSRSYGLGK 347
C+ L KD + SR+YGLGK
Sbjct: 87 CTCKLVKDEEGRESRAYGLGK 107
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Frame = +1
Query: 121 SSLVSYPTRNP*HRKLMKS-REPSNFCLVPNSARGTQGKMRSVTVKDVEQDK-IVKTVAA 294
S L + T++ R+ S ++ N L+P S+R +M + +KD++ +K VKT
Sbjct: 797 SGLSNVQTKSAISRRFPDSEKQERNRRLLPASSRSLTEEMNDLEIKDIQTEKQQVKTTNT 856
Query: 295 HLKK 306
++K
Sbjct: 857 RVQK 860
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,624,847
Number of Sequences: 28952
Number of extensions: 240292
Number of successful extensions: 632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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